Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14225 276 / 1e-90 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) AT5G40990 263 / 1e-85 GLIP1 GDSL lipase 1 (.1) AT1G53990 256 / 1e-82 GLIP3 GDSL-motif lipase 3 (.1) AT1G53940 237 / 2e-74 GLIP2 GDSL-motif lipase 2 (.1) AT1G53920 233 / 1e-73 GLIP5 GDSL-motif lipase 5 (.1) AT1G71120 188 / 2e-56 GLIP6 GDSL-motif lipase/hydrolase 6 (.1) AT4G10950 181 / 2e-53 SGNH hydrolase-type esterase superfamily protein (.1) AT3G14220 177 / 2e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G42170 177 / 4e-52 SGNH hydrolase-type esterase superfamily protein (.1) AT1G54030 177 / 8e-52 GOLD36, MVP1 MODIFIED VACUOLE PHENOTYPE 1, GOLGI DEFECTS 36, GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G133766 [exp] 691 / 0 AT3G14225 291 / 4e-96 GDSL-motif lipase 4 (.1) Potri.007G133500 [exp] 640 / 0 AT3G14225 296 / 7e-98 GDSL-motif lipase 4 (.1) Potri.013G065100 [exp] 277 / 3e-91 AT5G40990 375 / 4e-129 GDSL lipase 1 (.1) Potri.003G071500 [exp] 271 / 1e-88 AT1G53920 436 / 3e-153 GDSL-motif lipase 5 (.1) Potri.003G071400 [exp] 270 / 5e-88 AT5G40990 387 / 1e-133 GDSL lipase 1 (.1) Potri.017G134701 [exp] 267 / 4e-87 AT5G40990 359 / 4e-123 GDSL lipase 1 (.1) Potri.017G134601 [exp] 254 / 4e-82 AT5G40990 358 / 8e-123 GDSL lipase 1 (.1) Potri.017G136601 [exp] 251 / 2e-80 AT5G40990 337 / 8e-114 GDSL lipase 1 (.1) Potri.017G137000 [exp] 246 / 2e-78 AT5G40990 334 / 1e-112 GDSL lipase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013185 [exp] 249 / 1e-79 AT1G53920 447 / 3e-157 GDSL-motif lipase 5 (.1) Lus10037447 [exp] 238 / 2e-75 AT1G53920 430 / 4e-150 GDSL-motif lipase 5 (.1) Lus10028423 [exp] 196 / 2e-59 AT3G14820 317 / 7e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10041877 [exp] 192 / 3e-58 AT3G14820 321 / 1e-108 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005236 [exp] 185 / 3e-55 AT2G23540 390 / 1e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016918 [exp] 185 / 5e-55 AT2G23540 381 / 6e-131 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 181 / 2e-53 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10028424 [exp] 177 / 2e-52 AT3G14820 298 / 2e-99 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10005238 [exp] 176 / 9e-52 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10013572 [exp] 175 / 1e-51 AT1G75900 435 / 2e-153 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G133700.3 pacid=42766696 polypeptide=Potri.007G133700.3.p locus=Potri.007G133700 ID=Potri.007G133700.3.v4.1 annot-version=v4.1 ATGTTCATATTTGGAGATTCAATCTTTGATTCAGGAAACAATAACTATATCAATGTCAACGTTTCGTATAGAGCAAATTATTGGCCATATGGAGAAACCT TCTTCCACTACTTTCCTACTGGGAGATTCACCGATGGCCGTCTCATTGTTGACTTCATCGCAACAAAGATCGGTCAACCGTTCGTCCCCCCATATTTACA ACCTGGTATTAATTTCACTAATGGAGTAAATTTCGCAAGTGCTGGAGCTGGTGTCTTTCCTGAAGCTAATCCTGAAGTGATTAGTCTTGGCATGCAACTT AGCAACTTCAAGAACGTGGCCATTTCGATGGAGGAGCAGATTGGGGACAAAGAGGCAAAGAAACTGCTGAGCCAAGCAGTCTATGCGTCTTGTGTTGGAG CCAATGATTACTCTTACTTTGTTGATAATTTCCCTAATGCTACTCAGCTGGAGCAAGATGAATATGTGAACAATACGGTGGCAAGTAATTATTTACATAT TGAGCTTCTTCGCCTTCTTTTTCTTTTTCATTGTCGGCATTTGCAGGAATTGTACAATTTAGGTGCAAGGAAATTTGCTATTTTAAACATAGGGCCAAGA GGTTGCCAACCAGCCGCAAGACAAAGCGAAGAACTCCGTGGTGATGAATGTGATGAAGTATCATTAGAGATGATAAAGAAACATAACAGTGCTGCATCTA AAGCCATCAAGGAATTGGAAAGCAAACTATCAGGATTCAAATACTCAATTGCAGACTTCTATACCATCCTTTTGGATATGATAAAGCACCCAAAGGATTA CGGCTTCAAGGAATCAAGATATTCTTGTTGTGGCCATGGAATGTATAACGCAGCACATTGTGGAATAGAGCCATATACACTATGCAAAAATCCAAGTGAG TATCTATTCTTCGATGGATGGCATCCTACTGAGCATGGTTATCGGATTCTAGCTGATCGGTTTTGGAATGGCAAACCAAGTATCGCAGCCCCATATAACT TTAGACAACTATTTGATCTCGAATCTACACCCATCATTTTATCAGAAGAACATGAAGTTCCCCATTATGAATAA
AA sequence Show only first row Show all	>Potri.007G133700.3 pacid=42766696 polypeptide=Potri.007G133700.3.p locus=Potri.007G133700 ID=Potri.007G133700.3.v4.1 annot-version=v4.1 MFIFGDSIFDSGNNNYINVNVSYRANYWPYGETFFHYFPTGRFTDGRLIVDFIATKIGQPFVPPYLQPGINFTNGVNFASAGAGVFPEANPEVISLGMQL SNFKNVAISMEEQIGDKEAKKLLSQAVYASCVGANDYSYFVDNFPNATQLEQDEYVNNTVASNYLHIELLRLLFLFHCRHLQELYNLGARKFAILNIGPR GCQPAARQSEELRGDECDEVSLEMIKKHNSAASKAIKELESKLSGFKYSIADFYTILLDMIKHPKDYGFKESRYSCCGHGMYNAAHCGIEPYTLCKNPSE YLFFDGWHPTEHGYRILADRFWNGKPSIAAPYNFRQLFDLESTPIILSEEHEVPHYE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14225		GLIP4, EMB1474	GDSL-motif lipase 4 (.1)		Potri.007G133700 [exp]	0	1
AT3G14225		GLIP4, EMB1474	GDSL-motif lipase 4 (.1)		Potri.007G133766 [exp]	1.00	0.9826
AT3G20820			Leucine-rich repeat (LRR) fami...		Potri.001G017500 [exp]	2.82	0.9614	Pt-PGI.1
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150700 [exp]	4.89	0.9218
AT4G14305			Peroxisomal membrane 22 kDa (M...		Potri.010G068900 [exp]	6.92	0.9551
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073466 [exp]	16.30	0.9131
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008300 [exp]	18.16	0.9312
AT5G18080		SAUR24	small auxin up RNA 24, SAUR-li...		Potri.004G165400 [exp]	18.43	0.9364
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Potri.014G077500 [exp]	21.49	0.9033
AT5G42680			Protein of unknown function, D...		Potri.014G035000 [exp]	21.90	0.8649
AT3G59420		ACR4	crinkly4 (.1)		Potri.017G029900 [exp]	23.23	0.9118	Pt-ACR4.2

Compare expression of checked genes

Potri.007G133700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.