Plant FIBer expression Database

Potri.007G133800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G30700 608 / 0 unknown protein
AT1G61900 279 / 2e-89 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G018000
[exp]
840 / 0 AT2G30700 614 / 0.0 unknown protein
Potri.007G133733
[exp]
451 / 9e-160 AT2G30700 298 / 9e-100 unknown protein
Potri.004G016000
[exp]
298 / 3e-96 AT1G61900 524 / 0.0 unknown protein
Potri.011G003000
[exp]
286 / 9e-92 AT1G61900 521 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020048
[exp]
287 / 5e-93 AT1G61900 479 / 5e-169 unknown protein
Lus10006773
[exp]
276 / 6e-89 AT1G61900 445 / 1e-155 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G133800.3 pacid=42766678 polypeptide=Potri.007G133800.3.p locus=Potri.007G133800 ID=Potri.007G133800.3.v4.1 annot-version=v4.1
ATGGACTGTTTCCAGACTATTTGTTGTCTAAAGGGCTCACTAGGCCATCAGTTCTTGTTATTTATCGTTTGGTTATCCAGTTTCCAAGTTGCTGTGGCAT
TGCAGACCCTTCTGGAGCCCAGTCATGTTTCTTCTACATCTGAGCTAGCAACTCCACCAAATTTTGGAATTTTTGGTCCTATTGAAATATCACCTGCCAT
TCTCCCACGTAACCCTTATCCTGATGAATCTTTGGCTCCTATGTACCCAACTTTTCCCACCACGTACAAGCCAAATTTAACTGGCAAATGCCCTGTAAAT
TTCACCGCTTTGTCAAATATCATAGACAAAACAGCATCTGATTGCTCTCAACCCTTGGCAGCTCTTGTAGGAAATGTAATATGCTGTCCGCAGCTTGGCA
GTTTGCTCCACATCTTCCAGGGTTATTACAGTGTCAACTCTGATAAGTTGGTTTTGCAGAATGCAGTTGCTGATGATTGTTTTTCAGATATCATTAGTAT
ACTAGCCAGCAGAGGGGCCAATAAAACTATACCTACACTATGCTCTGTTAAATCATTAAATCTTACTGGTGGGTTGTGTCCAGTAAAGGATGTTGTCAAC
TTTGAGAAAATAGTAAATACAAGCAAATTACTGGAAGCCTGCAGTACCGTCGATCCTCTGAAAGAGTGCTGTAGACCAATTTGCCAATCTGCAATCACTG
AAGCTGCTCTTGAGATGTCTAGGACACAATTGACAACCAATGATAATGAAGAGTTAGTGAGCGAGCATAATCGTAATGATCCTCTTAGTGATTGTAAAGG
GGTGGTGTATTCATATCTCTCTAGGAAACTATCAGCAGATGCTGCAAATGCTGCATTCCGGACAGTATCTGCCTGCAAAGTTAACAAGGTTTGCCCTTTG
AATTTCACACGGCCTCTAGAAGTTATCAAAGCATGTCGAAATGTAGCTGCTCCCAGTCCCTCCTGCTGTAGCTCATTAAATACATACATGGCTGGGATAC
AAAATCAAATGTTAATTACAAACAAACAGGCCATAATTTGTGCAACAGTTTTGGGGTCCAAGCTACGACAAGGTGGGGTCATGACAAATGTGTATGAGCT
TTGTGACATTGACTTAAAAGATTTTAGCATCCAAGCATACAGACAACAAGGGTGTCTACTTCGTAGCTTGCCTCCCGATGTTATATTGGACAATTCAACA
GGGTTCAGCTTTACATGCGACTTGAATGACAACATTGCAGCTCCATGGCCTTCATCATCCTCCATTTCAACCTTGTCTCTTTGTGCCCCAGAGATGTCCT
TGCCTGCCTTGCCAACATCACAGATCAAAAACCCTGGCAATCGTGGTGGTGAGTTGGAGTTGCTGGTGCCCATTTTTTCATTTTTTATTTTCAGTGCATT
GTTGTACTGA
AA sequence
>Potri.007G133800.3 pacid=42766678 polypeptide=Potri.007G133800.3.p locus=Potri.007G133800 ID=Potri.007G133800.3.v4.1 annot-version=v4.1
MDCFQTICCLKGSLGHQFLLFIVWLSSFQVAVALQTLLEPSHVSSTSELATPPNFGIFGPIEISPAILPRNPYPDESLAPMYPTFPTTYKPNLTGKCPVN
FTALSNIIDKTASDCSQPLAALVGNVICCPQLGSLLHIFQGYYSVNSDKLVLQNAVADDCFSDIISILASRGANKTIPTLCSVKSLNLTGGLCPVKDVVN
FEKIVNTSKLLEACSTVDPLKECCRPICQSAITEAALEMSRTQLTTNDNEELVSEHNRNDPLSDCKGVVYSYLSRKLSADAANAAFRTVSACKVNKVCPL
NFTRPLEVIKACRNVAAPSPSCCSSLNTYMAGIQNQMLITNKQAIICATVLGSKLRQGGVMTNVYELCDIDLKDFSIQAYRQQGCLLRSLPPDVILDNST
GFSFTCDLNDNIAAPWPSSSSISTLSLCAPEMSLPALPTSQIKNPGNRGGELELLVPIFSFFIFSALLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G30700 unknown protein Potri.007G133800
[exp]
0 1
AT2G02170 Remorin family protein (.1.2) Potri.010G098000
[exp]
2.44 0.8507
AT2G30700 unknown protein Potri.007G133733
[exp]
6.16 0.8859
AT4G23650 CDPK6, CPK3 Calcium dependent protein kina... Potri.001G097400
[exp]
9.59 0.8203 CPK3,CDPK5.4
AT2G34710 HD ATHB14, PHB-1D,... PHABULOSA 1D, PHABULOSA, ARABI... Potri.001G372300
[exp]
11.31 0.8610 PHB.2
AT1G76660 unknown protein Potri.002G001100
[exp]
13.19 0.8715
AT2G24960 unknown protein Potri.004G172900
[exp]
19.23 0.8383
AT3G15390 SDE5 silencing defective 5 (.1.2) Potri.011G051300
[exp]
21.49 0.7554
AT4G32880 HD ATHB8, ATHB-8 homeobox gene 8 (.1) Potri.006G237500
[exp]
24.04 0.8300 Pt-HB1.6
AT1G58350 ZW18 Putative serine esterase fami... Potri.013G104400
[exp]
25.61 0.7840 Pt-ZW18.2
AT3G51850 CPK13 calcium-dependent protein kina... Potri.016G117200
[exp]
28.46 0.8604 CPK13.2

Potri.007G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.