Plant FIBer expression Database

Potri.007G133900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62270 364 / 3e-124 unknown protein
AT2G02880 97 / 2e-22 mucin-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G017901
[exp]
294 / 5e-97 AT5G62270 241 / 7e-77 unknown protein
Potri.015G004400
[exp]
105 / 2e-25 AT2G02880 335 / 1e-115 mucin-related (.1)
Potri.012G021000
[exp]
58 / 3e-10 AT2G02880 161 / 6e-50 mucin-related (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034311
[exp]
396 / 7e-137 AT5G62270 447 / 3e-157 unknown protein
Lus10035022
[exp]
383 / 7e-132 AT5G62270 425 / 6e-149 unknown protein
Lus10021682
[exp]
380 / 8e-131 AT5G62270 425 / 7e-149 unknown protein
Lus10030486
[exp]
101 / 6e-24 AT2G02880 347 / 7e-120 mucin-related (.1)
Lus10012838
[exp]
97 / 2e-22 AT2G02880 346 / 4e-119 mucin-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF12298 Bot1p Eukaryotic mitochondrial regulator protein
Representative CDS sequence
>Potri.007G133900.2 pacid=42765218 polypeptide=Potri.007G133900.2.p locus=Potri.007G133900 ID=Potri.007G133900.2.v4.1 annot-version=v4.1
ATGCACAGTATTCACCGGATTATATCTCGACTTTCTTCCACTGCGTTAAGCACAAGTGCTAATGCTGCAAGATTTCTAAAAGAACAAACAAGACCCACTT
TTGGAAATGGCAAAAGGGTTGCGTTGGTAAATGGGATTGGAGCTTATCAAGATATTGGGTCCAGGTTCTTCTCAGCGAAGTCAGGAGGAAGTGAGGGTGG
AGATGATTGGGATAGTGCAGTTGGATCTTTTGGTGGCTCTGAGTCTGTTACTGATGGTGATGGCCTTGGTTGGGGCGCAGCTTCATCATGGTCAACTGGA
TTGACTAAGGACCATTTTGATGGAGTAGAAGTGGTGGGCCAAAGGACTTCTAGTTCTAGTACTGATAGTGGAAAAGATGGTGGAGATGGAATGAAAGATA
CATCTCAGTATGCGATGGCCTATGATTTGCAAGACACTGAAGATTGGATAAGAGAATATGAGTCTGAGAATAAAAGGAGTGCAGCTTTTGTGGCTGGATG
GAATAAGAGGATTGACGAACTTAAAGTGTTGATGGATCAAATAAAGGAGCCTGGTTTAAGAGGGTCTTACTTGAAGGACTCAGAAAAGGCAGAGATGTAT
CGGTTGCATAAGGAAAATCCTGAAGTTTACACTGTTGAGAAGCTTTCTAAGGATTACAGGATTATGAGGCAAAGGGTGCACGCAATTCTTTGGTTGAAAG
AAATTGAGGAGGAAGAGGAAAAGAAGCTTGGTCATCCCTTGGATGATTCTATTGAGCTTTTGCTTGATAAGTTCCCAGAATTTTTCAAATCCCATGACCG
AGAATTCCATGTCGCTTCCCTTACCTACAAGCCTGAATTCAAGGTGATGCCAGAGGGCTGGGATGGTACCATCAAAGATATGGATGAAGTCCACTATGAG
ATATCCAAGAAGGAGGATGAGATTCTTTATCAAGAATTTGTTCTGAGGATGAACTTCAACAAAATGAAACTGGCAGGACAGGTGAAATGCCACAAGTATA
GTAGGCGCCGCACTTCTCAAGGTTGGAACTTCACAGTGGAGAAATTGGGGAAAAAAGGAAAACGTGGAGGTGGTGGTGGCTGGAAGTTTGTGAGCTTGCC
CGATGGGTCCAGCCGGCCACTGAATGACACTGAGAAAATCTATGTCAAACGAGAAACTCCTCGCCGCAGGCGCAGGAGCAGGATTTTTGATTAA
AA sequence
>Potri.007G133900.2 pacid=42765218 polypeptide=Potri.007G133900.2.p locus=Potri.007G133900 ID=Potri.007G133900.2.v4.1 annot-version=v4.1
MHSIHRIISRLSSTALSTSANAARFLKEQTRPTFGNGKRVALVNGIGAYQDIGSRFFSAKSGGSEGGDDWDSAVGSFGGSESVTDGDGLGWGAASSWSTG
LTKDHFDGVEVVGQRTSSSSTDSGKDGGDGMKDTSQYAMAYDLQDTEDWIREYESENKRSAAFVAGWNKRIDELKVLMDQIKEPGLRGSYLKDSEKAEMY
RLHKENPEVYTVEKLSKDYRIMRQRVHAILWLKEIEEEEEKKLGHPLDDSIELLLDKFPEFFKSHDREFHVASLTYKPEFKVMPEGWDGTIKDMDEVHYE
ISKKEDEILYQEFVLRMNFNKMKLAGQVKCHKYSRRRTSQGWNFTVEKLGKKGKRGGGGGWKFVSLPDGSSRPLNDTEKIYVKRETPRRRRRSRIFD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62270 unknown protein Potri.007G133900
[exp]
0 1
AT5G07900 Mitochondrial transcription te... Potri.003G190300
[exp]
4.24 0.7853
AT3G47930 ATGLDH "L-galactono-1,4-lactone dehyd... Potri.016G040300
[exp]
5.29 0.8188 Pt-ATGLDH.1
AT5G52380 VASCULAR-RELATED NAC-DOMAIN 6 ... Potri.012G141700
[exp]
5.47 0.8234
AT4G14000 Putative methyltransferase fam... Potri.001G321100
[exp]
7.87 0.8545
AT1G73940 unknown protein Potri.001G453400
[exp]
10.00 0.7812
AT3G59630 diphthamide synthesis DPH2 fam... Potri.006G123700
[exp]
13.85 0.7814
AT4G26780 MGE2, AR192 mitochondrial GrpE 2, Co-chape... Potri.015G065800
[exp]
14.14 0.8105
AT3G13570 SCL30A, At-SCL3... SC35-like splicing factor 30A ... Potri.001G006400
[exp]
14.38 0.6950 Pt-SCL33.2
AT1G31660 unknown protein Potri.001G394000
[exp]
16.12 0.7809
AT3G42170 BED zinc finger ;hAT family di... Potri.018G126750
[exp]
17.29 0.7879

Potri.007G133900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.