Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30710 692 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT1G04830 126 / 7e-32 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G13730 111 / 1e-26 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) AT3G02460 84 / 1e-17 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G07890 81 / 2e-16 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G15930 78 / 1e-15 PAM1 plant adhesion molecule 1 (.1) AT5G52580 75 / 3e-14 RabGAP/TBC domain-containing protein (.1.2) AT2G43490 74 / 8e-14 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT2G37290 74 / 1e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT3G59570 71 / 5e-13 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G131300 [exp] 115 / 5e-28 AT4G13730 414 / 4e-142 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.001G316700 [exp] 112 / 1e-26 AT4G13730 586 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.006G069300 [exp] 107 / 5e-25 AT4G13730 385 / 1e-130 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G057100 [exp] 105 / 2e-24 AT4G13730 602 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3) Potri.017G109000 [exp] 79 / 9e-16 AT5G15930 575 / 0.0 plant adhesion molecule 1 (.1) Potri.017G023200 [exp] 79 / 3e-15 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.002G218100 [exp] 77 / 3e-15 AT3G07890 696 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Potri.007G132900 [exp] 78 / 4e-15 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.004G106700 [exp] 76 / 1e-14 AT5G15930 584 / 0.0 plant adhesion molecule 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008148 [exp] 647 / 0 AT2G30710 625 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10019370 [exp] 588 / 0 AT2G30710 568 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027046 [exp] 538 / 0 AT2G30710 526 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10017104 [exp] 116 / 4e-28 AT1G04830 580 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10019369 [exp] 107 / 7e-28 AT2G30710 83 / 9e-20 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10037829 [exp] 97 / 2e-21 AT1G04830 537 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10004802 [exp] 80 / 8e-16 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10003047 [exp] 78 / 1e-15 AT3G02460 577 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10034099 [exp] 78 / 2e-15 AT3G02460 573 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10006410 [exp] 76 / 8e-15 AT3G07890 701 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.007G134200.1 pacid=42765816 polypeptide=Potri.007G134200.1.p locus=Potri.007G134200 ID=Potri.007G134200.1.v4.1 annot-version=v4.1 ATGAAGAACAGCGACAATAATTCAAGTTTGGATTCTAGAATCAATCAAACCCTCAAAAATGTTCAAGGGTTACTTAAAGGTCGTAGTATTCCTGGTAAAG TTTTACTGACCAGGAGAGCAGATCCACCAGAGGATCCCAGCTTACGATCATCAACTTTTGGAAGGAGCTCCTCAGAAAATGATGCTGGCACAAGTGATCA AATGGACATGTCGAAGGAGGCAGAAGCCCAGGGTACCAGCAAGCAGCTAAACAATAACATGACCACAAACAAGCTAAAACCTACAAACTCCAATGTTGAG ATAACGTCCAAAGAAGTTCAGAAGTCTGTCATGGGTGCTAGAGCTACAGATTCTGCTAGAGTCATGAAATTCACAAAGGAGCTATCAGGATCCACAGTTA CATTAGAGAAGTTGCGTGAGTTAGCTTGGAGTGGAGTACCACCATATATGCGCCCAAACATATGGAGGCTTCTATTGGGATATGCATCGCCTAATTCAGA TAGAAGGGAGGGAGTTCTAAGAAGAAAGCGCCTTGAGTACCTTGACTGTGTTGCTCAATTTTATGACATTCCAGATACTGAACGTTCAGATGATGAGATC AACATGCTTCGGCAGATTTCTGTTGATTGTCCAAGAACAGTACCTGATGTCATTTTCTTTCAGCAAGAACAAGTTCAGAAATCCTTGGAGCGCATTCTTT ATACATGGGCCATTCGGCATCCCGCAAGTGGATATGTTCAGGGAATAAATGACCTTGCCACACCCTTTCTGGTTGTTTTCCTGTCTGAACACTTGGAAGG GGACATACATAAGTGGTCAATTTCTGATCTATCTCCAGATAAAATCTCCAACGTAGAGGCTGATTGTTATTGGTGCCTATCTAAGTTACTTGATGGCATG CAAGACCATTACACATTTGCTCAACCAGGAATACAAAGACTTGTGTTTAAGCTCAAGGAATTGGTTAATAGGATTGATGAACCTGTTTCGAGACACATGG AAGAGCAAGGGCTTGAATTTCTTCAATTTGCTTTCCGCTGGTTTAACTGTCTTTTAATACGTGAGATTCCTTTTAATCTCGTGACTCGCCTATGGGACAC ATATCTTGCTGAAGGAGATGCATTGCCAGATTTCCTCGTATACATATTTGCCAGTTTTCTTTTGACGTGGTCAGAAGAGCTTCAGAAGCTTGATTTCCAA GAGTTGGTGATGTTTCTTCAACACCTACCAACTCAGAATTGGACGCACCAAGAGCTTGAGATGGTGCTCTCTAGAGCATTCATGTGGCACAGTATGTTCA ACAACTCCCCCAGCCACTTAGCAAGCTAG
AA sequence Show only first row Show all	>Potri.007G134200.1 pacid=42765816 polypeptide=Potri.007G134200.1.p locus=Potri.007G134200 ID=Potri.007G134200.1.v4.1 annot-version=v4.1 MKNSDNNSSLDSRINQTLKNVQGLLKGRSIPGKVLLTRRADPPEDPSLRSSTFGRSSSENDAGTSDQMDMSKEAEAQGTSKQLNNNMTTNKLKPTNSNVE ITSKEVQKSVMGARATDSARVMKFTKELSGSTVTLEKLRELAWSGVPPYMRPNIWRLLLGYASPNSDRREGVLRRKRLEYLDCVAQFYDIPDTERSDDEI NMLRQISVDCPRTVPDVIFFQQEQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFLSEHLEGDIHKWSISDLSPDKISNVEADCYWCLSKLLDGM QDHYTFAQPGIQRLVFKLKELVNRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFNLVTRLWDTYLAEGDALPDFLVYIFASFLLTWSEELQKLDFQ ELVMFLQHLPTQNWTHQELEMVLSRAFMWHSMFNNSPSHLAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G30710			Ypt/Rab-GAP domain of gyp1p su...		Potri.007G134200 [exp]	0	1
AT2G20760			Clathrin light chain protein (...		Potri.011G049500 [exp]	8.30	0.8709
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	29.46	0.8417
AT1G50120			unknown protein		Potri.007G071000 [exp]	34.23	0.8696
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.003G005900 [exp]	36.12	0.8415
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	42.74	0.8634
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.004G124500 [exp]	44.69	0.8520
AT5G43420			RING/U-box superfamily protein...		Potri.010G072700 [exp]	48.29	0.8600
AT5G25530			DNAJ heat shock family protein...		Potri.018G034600 [exp]	58.58	0.8392
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Potri.008G007500 [exp]	65.93	0.8515	Pt-MAN1.1
AT3G29360		UGD2	UDP-glucose dehydrogenase 2, U...		Potri.017G092000 [exp]	70.29	0.8417

Compare expression of checked genes

Potri.007G134200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.