Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09320 113 / 1e-28 VPS9B Vacuolar sorting protein 9 (VPS9) domain (.1) AT3G46870 107 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62350 91 / 3e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53170 66 / 3e-12 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48730 64 / 1e-11 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G27750 57 / 1e-09 EMB3123 EMBRYO DEFECTIVE 3123, unknown protein AT5G02860 56 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 55 / 2e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G21222 54 / 3e-08 protein kinase family protein (.1) AT3G06430 54 / 3e-08 AtPPR2, EMB2750 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G169600 [exp] 122 / 7e-34 AT5G09320 219 / 8e-67 Vacuolar sorting protein 9 (VPS9) domain (.1) Potri.001G275000 [exp] 108 / 2e-28 AT1G62350 274 / 7e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G038200 [exp] 104 / 9e-27 AT3G46870 326 / 2e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G058300 [exp] 62 / 4e-11 AT3G53170 618 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G051400 [exp] 60 / 1e-10 AT3G27750 171 / 2e-53 EMBRYO DEFECTIVE 3123, unknown protein Potri.002G243600 [exp] 57 / 3e-09 AT5G48730 691 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G006800 [exp] 56 / 8e-09 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G019000 [exp] 56 / 1e-08 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.009G092100 [exp] 55 / 2e-08 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016476 [exp] 107 / 8e-28 AT3G46870 346 / 3e-121 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036049 [exp] 105 / 2e-27 AT1G62350 316 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040756 [exp] 105 / 5e-27 AT3G46870 349 / 2e-122 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000892 [exp] 104 / 8e-27 AT1G62350 318 / 3e-111 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011849 [exp] 67 / 2e-12 AT5G48730 681 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10022787 [exp] 65 / 1e-11 AT5G48730 687 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000862 [exp] 61 / 2e-10 AT3G06430 644 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024893 [exp] 58 / 2e-09 AT3G53170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028683 [exp] 57 / 2e-09 AT3G06430 640 / 0.0 pentatricopeptide repeat 2, embryo defective 2750, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013894 [exp] 57 / 4e-09 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.007G134300.1 pacid=42764850 polypeptide=Potri.007G134300.1.p locus=Potri.007G134300 ID=Potri.007G134300.1.v4.1 annot-version=v4.1 ATGAAATCCGCATTAATGGGTTCTCTCAAATTCCAAATCCCACAACTAGGCTTCCACAAAACCCTACAAAAACCCCACCTTCCTCGTTCCTCAGTCATCA CCTGCAGTCTAAGAGGGAAGCCAAGACCACCTTTGTGGAGGGCAAAGAGGTTATCCACGGAAGCCATTCAAGTTATCCAGTCTCTCAAGTTAGCTAGATC GTCCACACCAAGATTAGAAGAAGTCTTTAACAGTAAGCTCTCAAGATTGCTCAAGACTGACTTATTGGATACCCTTGCTGTCTTGCAAAACCAAAATGAG TTGGACTTGGCCCTCAAGGTGTTTGAGTTTGTGAGGAAGGAGGTGTGGTACAAGCCAGATATATTATTGTATCATGCAATGATTCAGATGGTGGGGAGGA ACAAAATGGTTGAAATGGCTGAGGAATTTTTTGGCAAATTGGAAAAAGAAGAAGGGTTGAAACCGGATACAAGAGCATTCACTGAGATGATTGGTGCTTA TCTGCAAGTGGGTATGATTGATAAGGCGATGGAAACATATGAAAGAATGAAGGCATCAGGATGTGACCCGGATAAGTTAACTTTTAGAATTTTGATTAGG AACCTTGAGGATGCTGGAAAAGAAGAGCTTGTAGATCGTATAAAGAAAGAATGTGGTGATTATATGGATTATCCTAAGAAATTCCTTGAAGAAGTTGAGA GAAAGAAAAATGTAAAGAGGCTGGTGGTCGATTTTTTTTGA
AA sequence Show only first row Show all	>Potri.007G134300.1 pacid=42764850 polypeptide=Potri.007G134300.1.p locus=Potri.007G134300 ID=Potri.007G134300.1.v4.1 annot-version=v4.1 MKSALMGSLKFQIPQLGFHKTLQKPHLPRSSVITCSLRGKPRPPLWRAKRLSTEAIQVIQSLKLARSSTPRLEEVFNSKLSRLLKTDLLDTLAVLQNQNE LDLALKVFEFVRKEVWYKPDILLYHAMIQMVGRNKMVEMAEEFFGKLEKEEGLKPDTRAFTEMIGAYLQVGMIDKAMETYERMKASGCDPDKLTFRILIR NLEDAGKEELVDRIKKECGDYMDYPKKFLEEVERKKNVKRLVVDFF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09320		VPS9B	Vacuolar sorting protein 9 (VP...		Potri.007G134300 [exp]	0	1

Compare expression of checked genes

Potri.007G134300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.