Plant FIBer expression Database

Potri.007G134400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43540 124 / 2e-36 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G134400.1 pacid=42765312 polypeptide=Potri.007G134400.1.p locus=Potri.007G134400 ID=Potri.007G134400.1.v4.1 annot-version=v4.1
ATGGGAATATCAGCCTCAAAACGAGTCAAAACAACACTATCCAACTCACAAGAGTTCAACTTAGCTTGTGACTCAACCTTCACTCACTGTCTATCCCTAA
CTCAACATGCTTTCCAAGGCATCCTCCCTTACCAGCTCCCTACCGCCACCACTTACCTCCACACCACCCTCACCACGACCGCCGCCGCCGCCCCACTAAT
CCTAAAATGGGTACCATCTCCACCAACCCGGGCCCAGATTGACTGGGCACTCAGGATGGTGACAAACAGGAAGCCAGGAGCAGCCCAGGAGGAGAAAGGG
GAGCTTATTCTTGAGCATGCCAAATTTAGAGAGTGGGCTTTGGTTTTGTTCACAGAGGCTGCTGTGGGGAATGCTGGTAAGGCTATTTTGGGTCGGCTGC
CACTTGGGGTTGCTGGGATTGTGGGTGTTGGTGCGGTAGTGAAGGGTGGTAAGGAGGTGGTGGGGGCGGCGATTGGCGTTTACGCGCTTGGGGTTGTTAC
CTCTGTTTATCTTAGTTTGTCTGGTTAA
AA sequence
>Potri.007G134400.1 pacid=42765312 polypeptide=Potri.007G134400.1.p locus=Potri.007G134400 ID=Potri.007G134400.1.v4.1 annot-version=v4.1
MGISASKRVKTTLSNSQEFNLACDSTFTHCLSLTQHAFQGILPYQLPTATTYLHTTLTTTAAAAPLILKWVPSPPTRAQIDWALRMVTNRKPGAAQEEKG
ELILEHAKFREWALVLFTEAAVGNAGKAILGRLPLGVAGIVGVGAVVKGGKEVVGAAIGVYALGVVTSVYLSLSG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43540 unknown protein Potri.007G134400
[exp]
0 1
AT2G14910 unknown protein Potri.001G298200
[exp]
1.00 0.9119
AT5G47435 formyltetrahydrofolate deformy... Potri.003G078000
[exp]
1.41 0.9037
AT1G09700 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BIN... Potri.017G126700
[exp]
7.07 0.8963
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021900
[exp]
9.48 0.8945
AT1G65770 AMR1 ascorbic acid mannose pathway ... Potri.005G105400
[exp]
10.09 0.8848
AT1G20830 MCD1 multiple chloroplast division ... Potri.005G255300
[exp]
10.39 0.8866
AT2G42040 unknown protein Potri.006G193300
[exp]
11.31 0.8752
Potri.019G045600
[exp]
12.00 0.9032
AT2G45830 DTA2 downstream target of AGL15 2 (... Potri.014G081600
[exp]
12.32 0.8727
AT5G39410 Saccharopine dehydrogenase (.... Potri.004G126100
[exp]
14.07 0.8875

Potri.007G134400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.