Plant FIBer expression Database

PHB1.1 (Potri.007G134700) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PHB1.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G28510 462 / 2e-166 ATPHB1 prohibitin 1 (.1)
AT2G20530 455 / 3e-163 ATPHB6 prohibitin 6 (.1.2)
AT1G03860 447 / 2e-160 ATPHB2 prohibitin 2 (.1.2.3)
AT5G44140 413 / 5e-147 ATPHB7 prohibitin 7 (.1)
AT3G27280 272 / 2e-91 ATPHB4 prohibitin 4 (.1.2)
AT5G40770 272 / 3e-91 ATPHB3 prohibitin 3 (.1)
AT5G14300 226 / 1e-73 ATPHB5 prohibitin 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G017400
[exp]
490 / 3e-177 AT4G28510 457 / 5e-164 prohibitin 1 (.1)
Potri.017G065800
[exp]
274 / 4e-92 AT5G40770 433 / 7e-155 prohibitin 3 (.1)
Potri.001G335700
[exp]
272 / 2e-91 AT5G40770 429 / 3e-153 prohibitin 3 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042515
[exp]
447 / 2e-160 AT1G03860 433 / 9e-155 prohibitin 2 (.1.2.3)
Lus10021978
[exp]
446 / 8e-160 AT1G03860 436 / 9e-156 prohibitin 2 (.1.2.3)
Lus10019161
[exp]
433 / 2e-154 AT4G28510 434 / 4e-155 prohibitin 1 (.1)
Lus10034395
[exp]
430 / 2e-153 AT1G03860 429 / 3e-153 prohibitin 2 (.1.2.3)
Lus10014604
[exp]
266 / 1e-88 AT5G40770 482 / 2e-174 prohibitin 3 (.1)
Lus10032072
[exp]
265 / 2e-88 AT5G40770 486 / 7e-176 prohibitin 3 (.1)
Lus10035521
[exp]
157 / 5e-46 AT5G40770 221 / 1e-71 prohibitin 3 (.1)
Lus10027776
[exp]
124 / 2e-34 AT5G40770 173 / 9e-54 prohibitin 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0433 SPFH PF01145 Band_7 SPFH domain / Band 7 family
Representative CDS sequence
>Potri.007G134700.1 pacid=42766543 polypeptide=Potri.007G134700.1.p locus=Potri.007G134700 ID=Potri.007G134700.1.v4.1 annot-version=v4.1
ATGAATTTCAAGAATGTGAAAGTACCCAATTTGCCGGGTGGTGGTGCCATTGGAACTCTGATTAAGCTTGGAGTTATTGGTGGGCTTGGTTTGTATGGAG
CTGCCAACAGTCTTTACAACGTTGATGGTGGACATAGAGCAATCATGTTCAACCGTATAGTTGGTGTCAAAGACAAGGTTTATCCTGAGGGGACACACTT
TATGGTTCCATGGTTTGAAAGGCCCGTCATTTATGATGTTCGTGCACGACCCCATCTGGTAGAGAGTACTTCAGGGAGCCGTGATCTCCAAATGGTCAAG
ATTGGGCTTCGAGTTCTTACTCGTCCTGTGGCAGACCAGCTACCTGAAATTTATAGAACCCTTGGTGAGAATTATAATGAAAGAGTTTTGCCTTCTATCA
TTCATGAAACACTGAAAGCTGTGGTTGCACAATACAATGCCAGTCAGCTCATCACTCAGAGAGAGGCTGTTAGTAGAGAAATAAGGAAGATTTTGACAGA
AAGAGCGGTCAATTTTAACATTGCACTTGATGACGTGTCCATTACAAGCTTGACATTTGGGAAAGAATTTACCGCTGCCATCGAAGCCAAACAAGTGGCC
GCACAAGAAGCTGAAAGAGCTAAATTTATTGTGGAAAAAGCTGAACAAGACAAGAAAAGTGCTGTTATCAGAGCTGAGGGAGAGGCCACCAGTGCTCAGC
TCATTGGTCAAGCTATTGCCAACAATCCTGCATTTATCACTCTAAGGAAGATTGAAGCCGCAAGAGAAATTGCACATACCATCTCAAATTCAGCCAACAA
GGTTTTCCTTGATTCTGGTGATTTGCTGTTGAACCTTCAGAAGATGGAGTTAGAGACCACTGGGAAGAAATAG
AA sequence
>Potri.007G134700.1 pacid=42766543 polypeptide=Potri.007G134700.1.p locus=Potri.007G134700 ID=Potri.007G134700.1.v4.1 annot-version=v4.1
MNFKNVKVPNLPGGGAIGTLIKLGVIGGLGLYGAANSLYNVDGGHRAIMFNRIVGVKDKVYPEGTHFMVPWFERPVIYDVRARPHLVESTSGSRDLQMVK
IGLRVLTRPVADQLPEIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERAVNFNIALDDVSITSLTFGKEFTAAIEAKQVA
AQEAERAKFIVEKAEQDKKSAVIRAEGEATSAQLIGQAIANNPAFITLRKIEAAREIAHTISNSANKVFLDSGDLLLNLQKMELETTGKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G28510 ATPHB1 prohibitin 1 (.1) Potri.007G134700
[exp]
0 1 PHB1.1
AT2G19080 metaxin-related (.1) Potri.006G077100
[exp]
2.00 0.8971
AT5G50810 TIM8 translocase inner membrane sub... Potri.015G102000
[exp]
3.00 0.8986
AT5G61030 GR-RBP3 glycine-rich RNA-binding prote... Potri.015G057400
[exp]
3.46 0.8883
AT3G02530 TCP-1/cpn60 chaperonin family ... Potri.004G101500
[exp]
4.24 0.8831
AT5G42150 Glutathione S-transferase fami... Potri.015G038300
[exp]
4.89 0.8842
AT4G16720 Ribosomal protein L23/L15e fam... Potri.003G078700
[exp]
6.32 0.8757 Pt-RPL15.4
AT5G40770 ATPHB3 prohibitin 3 (.1) Potri.001G335700
[exp]
6.92 0.8672 Pt-PHB3.2
AT5G27430 Signal peptidase subunit (.1) Potri.006G234600
[exp]
7.93 0.8421 SPP.3
AT1G07070 Ribosomal protein L35Ae family... Potri.008G063200
[exp]
9.79 0.8909
AT3G09890 Ankyrin repeat family protein ... Potri.006G121500
[exp]
12.48 0.8451

Potri.007G134700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.