Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03840 435 / 3e-149 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 429 / 3e-147 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT3G50700 335 / 1e-110 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 332 / 7e-109 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G55110 326 / 3e-107 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT2G02080 327 / 1e-106 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT4G02670 321 / 6e-106 C2H2ZnF ATIDD12 indeterminate(ID)-domain 12 (.1) AT3G13810 324 / 1e-105 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) AT5G03150 322 / 6e-105 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT1G14580 317 / 1e-103 C2H2ZnF C2H2-like zinc finger protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G017100 [exp] 845 / 0 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.006G129300 [exp] 375 / 8e-126 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.016G088500 [exp] 363 / 6e-121 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.002G048000 [exp] 339 / 3e-112 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.005G027200 [exp] 338 / 5e-111 AT1G03840 300 / 7e-96 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.013G019200 [exp] 337 / 1e-110 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.007G028800 [exp] 337 / 2e-110 AT5G66730 416 / 1e-140 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.005G125600 [exp] 335 / 1e-109 AT5G66730 429 / 4e-146 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Potri.003G036900 [exp] 335 / 1e-109 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018633 [exp] 414 / 7e-142 AT1G03840 365 / 2e-122 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10010820 [exp] 328 / 1e-110 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 334 / 2e-109 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10041723 [exp] 333 / 7e-109 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10019927 [exp] 327 / 4e-107 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 324 / 4e-106 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10008396 [exp] 324 / 4e-105 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10041356 [exp] 333 / 2e-104 AT1G03840 332 / 2e-103 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004497 [exp] 319 / 3e-104 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10004840 [exp] 320 / 2e-103 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G135000.1 pacid=42765391 polypeptide=Potri.007G135000.1.p locus=Potri.007G135000 ID=Potri.007G135000.1.v4.1 annot-version=v4.1 ATGTCAGAGAACATCATGGCAGCAGAAGAAGCAATAACTAGTAGTTATAATGGTTCTGTCGAAAATCCTGTTGGTGGATCCAATCCCCCTGCTCTAAAGA AGAAGAGAAACCTTCCAGGAACACCAGATCCTGAAGCAGAAGTCATAGCTTTATCACCAAAAACTCTCATGGCCACCAACAGATTCTTGTGTGAAATATG TGGTAAAGGGTTTCAAAGGGATCAAAATCTACAACTCCATAGGAGAGGACACAACCTTCCATGGAAGCTGAAGCAAAGGACAAATAATGAAGTAAGAAAG CGCGTTTATGTCTGCCCTGAAAAGACCTGTGTCCACCATCATCCCTCTAGGGCTCTTGGAGACTTAACAGGTATAAAGAAGCACTTTTGTAGGAAGCATG GTGAGAAGAAATGGAAGTGTGAAAAATGTTCGAAGAGATATGCTGTCCAGTCAGATTGGAAAGCACACTCAAAGACTTGTGGCACTAGGGAATACAAATG TGACTGTGGGACTCTATTTTCAAGGAGAGATAGCTTCATCACTCATAGGGCCTTCTGTGATGCCTTAGCAGAGGAAACAGCAAGAGTAAATGCAGTATCT AGCATAAGAAACTTAACTGCTGGCAACATCAGTTATCATCTACCGGGGAACCCATTAGGGCCTAACATGGCACAACATTTCTCTTCAATTTTCAAGCCAA TTTCAAGTAATGATCACCACACAAGACAAGGAGGACTTTCCTTGTGGATGCACCAAGGAGGAGTACCCCATGTCAGTGAAGCAATGGGCAATAATATTCA AGAGATTCATCAAATTGGCGCTATGACTAGTTCAGGAGCTATATTTGGTGACCCTCTTGCTGTTTCATGCTCAAGTACTCCACCATCTGATCATTATCAG TTAAATTGGCCAGTGTTTGGAAACAAGATCTCTTCAAATAATGCTCACGAGGAGCTGACAAGCACTTTAGTACTTCCTTTAAGCAATGTTAAGGAAGCAG CTGCTGCAAGTCAGCTAGTAAGTGTTCCTTCATTGTACAGTACCCAACAACAACAATCCCATCAAACAACTTCAGCAAATATGTCAGCCACTGCTTTGCT GCAAAAAGCTACTCAGATTGGTGCAACCTCAACAGATCCATCATTCCTTGGGAGTTTTGGGCTAAAGAGCTTCAGTACTAAAGCTCAAGATGGGAACAAC AAGTTCTGTGGACTGTATGGTTCAAGCCCTATAAGCACTAACCCAGCAAGTGATATGGAAAACTCAGGAAATGATGAGATTCCCACTTTGAATCAGCTTC AAATGTATTCTGCTAAAAGGCAGAAAATATTTCAAAGTGATCAAGATAGCCCTGCAGGAGGGCAAACTAGAGACTTTCTTGGTGTTGGTGTACAAGCCAT ATGCCACCCATCGTCTATCAATGGATGGATTTAA
AA sequence Show only first row Show all	>Potri.007G135000.1 pacid=42765391 polypeptide=Potri.007G135000.1.p locus=Potri.007G135000 ID=Potri.007G135000.1.v4.1 annot-version=v4.1 MSENIMAAEEAITSSYNGSVENPVGGSNPPALKKKRNLPGTPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTNNEVRK RVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVNAVS SIRNLTAGNISYHLPGNPLGPNMAQHFSSIFKPISSNDHHTRQGGLSLWMHQGGVPHVSEAMGNNIQEIHQIGAMTSSGAIFGDPLAVSCSSTPPSDHYQ LNWPVFGNKISSNNAHEELTSTLVLPLSNVKEAAAASQLVSVPSLYSTQQQQSHQTTSANMSATALLQKATQIGATSTDPSFLGSFGLKSFSTKAQDGNN KFCGLYGSSPISTNPASDMENSGNDEIPTLNQLQMYSAKRQKIFQSDQDSPAGGQTRDFLGVGVQAICHPSSINGWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.007G135000 [exp]	0	1
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Potri.004G046100 [exp]	1.41	0.9206
AT5G20320		DCL4, ATDCL4	dicer-like 4 (.1.2)		Potri.006G188800 [exp]	3.46	0.8852	DCL905
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Potri.001G137600 [exp]	4.89	0.8951
AT4G16790			hydroxyproline-rich glycoprote...		Potri.001G155000 [exp]	5.65	0.8918
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412000 [exp]	7.21	0.8846
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	8.71	0.9008
AT3G14470			NB-ARC domain-containing disea...		Potri.015G121800 [exp]	8.94	0.8878	FRGA-A30.27
AT1G65780			P-loop containing nucleoside t...		Potri.017G140601 [exp]	9.00	0.8878
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.017G016600 [exp]	9.21	0.8797
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	9.89	0.8813	ATGSL04.1

Compare expression of checked genes

Potri.007G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.