Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28440 1109 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 996 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 697 / 0 HSL2 HAESA-like 2 (.1) AT1G09970 602 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G65700 564 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT5G49660 563 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G49670 561 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 560 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G19700 558 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT4G28650 557 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016600 [exp] 1486 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 1153 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.011G058100 [exp] 1131 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.002G106800 [exp] 606 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 605 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.006G235800 [exp] 598 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 586 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G088100 [exp] 582 / 0 AT5G25930 949 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.007G009200 [exp] 575 / 0 AT5G65700 1530 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018636 [exp] 1226 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 1031 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 1009 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 1001 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10007232 [exp] 601 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 595 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10006028 [exp] 591 / 0 AT5G25930 1116 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10005491 [exp] 589 / 0 AT5G25930 1104 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10009476 [exp] 565 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10039641 [exp] 563 / 0 AT5G65700 1580 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G135400.1 pacid=42764819 polypeptide=Potri.007G135400.1.p locus=Potri.007G135400 ID=Potri.007G135400.1.v4.1 annot-version=v4.1 ATGTCTTTTTATCTACCCTTACCACCCAAGTTTTTCCAAGACTATTGTAACTGGCCCCCACTTTTGTACCCTTCAAAACCCTTATCCCAAAAAAACCAAA CACTCAAACACTTTCCCACCACTTTCCCTCTCTTTCTCCCTCTAAAAAACATGTTTTTTCACCTTTCCCTTCTCTTTCTCTCTCTACTCTTCACGTCCAA CTCGCTGAATCAGGATGGCCTGTTTCTCCAGCAAGTCAAGCTTGGTCTCTCCGATCCATCTCGCGCCCTCTCCTCTTGGAACGACAGGGACGACACCCCG TGCGGGTGGTATGGTGTTACTTGCGACGAGTCGACTCAACGAGTCACCTCCCTCAATCTTTCTAACTTGGGGCTCATGGGACCCTTCCCTTACTTCCTTT GCCGCCTGACCAATCTGACGTCGGTTAATCTGCTGAACAATTCCATCAACTCGTCTCTCACCTCTGACATTGCCGCGTGTCAGAGTCTCGAGGCCCTTAA CTTGAGTGAAAATCTTCTGGTGGGGTCCCTTCCCGAGTCACTGTCCGAGTTGAAAAACCTCAAGGAACTCAATTTGGCGTCGAACAATTTTTCCGGCAGT ATTCCGGCGAAGTTCGGTGAGTTCCAGAAGCTGGAGTGGATTTCACTTGCTGAGAACTTGCTAACCGGGACAGTACCCAGTGTGCTTGGTAACATTTCCA CACTCCAGTATCTTCTACTGAGTTATAACCCCTTTGCCCCGGGTCAGATACCGAGTCAGCTCAGTAACCTGACTAACCTGGTAGAGCTCTGGCTTGCTGG TTGTAATCTCGTGGGTTCGATTCCCGAGAGTTTAGGCAAGCTATCTCGGTTGACTAATCTTGATTTGTCACTGAATCGACTTACTGGGTCGATACCGAGT TCACTCACTTGGCTGAAGAGCGTTGAGCAAATTGAGCTTTATAATAACACTTTATCAGGTGAATTGCCTCTGGGTTTTTCGAACTTGACCTTGCTGAGAA GATTTGATGTCTCAACGAATGAGTTAACTGGGACAATCCCGAATGAGTTGACTCAGTTGGAGCTCGAGTCGCTGCACTTGTTTGAGAACAGATTTGAAGG GACTTTGCCAGAGAGCATAGCAAAGTCACCAAATTTATACGATCTCAAATTGTTCAACAATAAATTTACTGGCGAGTTACCGAGTCAGCTCGGGCTTAAC TCACCATTGAAGTGGTTAGATGTTTCATACAACGGATTCTCCGGTGCGATACCAGAGAGCTTGTGTGCAAAAGGTGAGTTGGAGGACTTGATTTTGATTT ACAATTCATTTTCCGGAAAAATCCCAGAAAGTCTGGGAAAATGCAACAGTTTAGGCCGGGTTCGGTTAAGGAATAATAGGTTCAATGGCATTGTTCCTGG GGAATTCTGGGGGCTACCAAGAGTTTACTTGTTTGAGCTTGAAGGTAATTCATTTTCTGGGAAAGTTTCTAATAGGATTGCCTCTGCTTATAATCTCTCT GTTTTGAAGATTTCAAAAAATCAGTTTTCGGGTAATTTACCTGCGGAGATTGGTTTTTTAGACAAGCTGATTGAGTTTTCGGCTAGTGATAACTTGTTTA CGGGTCCAATTCCAGGGAGTTTGGTTAATTTGAGTAACTTGAGTACGCTTGTGCTTGATGACAATGAATTGTCTGGTGGGATTCCATCCGGAATTCAGGG TTGGAAGAGCTTGAATGAGCTTCGTTTGGCGAATAATAGGTTATCGGGTTCAATCCCAAATGAGATAGGGAGCTTGCAAGTGCTTAATTATCTTGATCTT TCTGGGAATCACTTCTCGGGGAAGATTCCGATACAATTGGACGATTTGAAGCTCAATTTGTTGAACTTGTCGAACAATATGCTCTCCGGGGCGCTCCCTC CACTTTATGCTAAAGAGATGTATCGGAGTAGCTTTGTGGGAAATCCAGGTTTGTGTGGTGACTTGGAGGATCTTTGTCCACAGGAAGGTGATCCTAAGAA GCAGAGTTACTTGTGGATTCTTCGGTCGATTTTTATACTTGCTGGTATAGTGTTTGTTGTTGGTGTTGTTTGGTTCTACTTCAAGTACCAGAATCTCAAG AAAGCAAAGAGAGTTGTTATTGCATCGAAGTGGAGATCCTTCCATAAGATTGGTTTCAGTGAATTTGAGATCCTTGATTATCTTAAAGAGGATAATGTGA TTGGAAGTGGAGGTTCTGGGAAAGTCTACAAAGCTGTGCTCAGCAATGGGGAGACTGTAGCAGTGAAGAAAATAAGTGGAGAGAGCAAGAAAAAGGATAC AAGTCGCAGTTCCATCAAAGATGAATTTGAAGCAGAAGTTGAAACTTTGGGAAACATCAGGCACAAAAACATTGTGAGATTGTGGTGTTGTTGCAATGCT GGAGATTGCAAGCTTCTGGTTTATGAATATATGCCAAATGGGAGCTTGGGGGATTTGTTGCATAGTAGCAAGGGAGGCTTGTTGGATTGGCCTACAAGGT ATAAGATAGCTTTGGATGCAGCTGAGGGCTTATCTTATTTGCATCACGATTGTGTTCCTCCGATAGTTCACCGGGATGTAAAATCAAACAACATACTGTT AGACGCAGAATTTGGTGCTAGAGTTGCGGATTTCGGGGTTGCTAAGGTGTTTCAAGGAGTTAACAAGGGGACTGAATCCATGTCTGTTATTGCGGGCTCC TGCGGTTACATTGCACCAGAATATGCATATACTGTTAGAGTGAATGAAAAGAGCGACATCTACAGTTTTGGGGTGGTCATATTAGAGCTGGTAACAGGCA GACTCCCCATAGATCCAGAATTCGGAGAGAAAGACTTGGTCAAATGGGTCTGCACAACCTTAGTAGACCAGAATGGCATGGATCTTGTAATTGACCCCAA GCTCGATTCACGTTACAAGGATGAAATCTCCGAGGTTCTTGATGTCGGTCTCCGTTGCACAAGCTCACTTCCCATCGACCGGCCCTCAATGCGAAGGGTG GTGAAAATGCTGCAGGAAGCCGGCATGGGAAACAAGCCTAAAGCCAACAAGAGTGACGGGAAGCTCTCTCGTTTTTACTATGAAGTCGTCTCCGATCAAG CAAGGATAGTTTAA
AA sequence Show only first row Show all	>Potri.007G135400.1 pacid=42764819 polypeptide=Potri.007G135400.1.p locus=Potri.007G135400 ID=Potri.007G135400.1.v4.1 annot-version=v4.1 MSFYLPLPPKFFQDYCNWPPLLYPSKPLSQKNQTLKHFPTTFPLFLPLKNMFFHLSLLFLSLLFTSNSLNQDGLFLQQVKLGLSDPSRALSSWNDRDDTP CGWYGVTCDESTQRVTSLNLSNLGLMGPFPYFLCRLTNLTSVNLLNNSINSSLTSDIAACQSLEALNLSENLLVGSLPESLSELKNLKELNLASNNFSGS IPAKFGEFQKLEWISLAENLLTGTVPSVLGNISTLQYLLLSYNPFAPGQIPSQLSNLTNLVELWLAGCNLVGSIPESLGKLSRLTNLDLSLNRLTGSIPS SLTWLKSVEQIELYNNTLSGELPLGFSNLTLLRRFDVSTNELTGTIPNELTQLELESLHLFENRFEGTLPESIAKSPNLYDLKLFNNKFTGELPSQLGLN SPLKWLDVSYNGFSGAIPESLCAKGELEDLILIYNSFSGKIPESLGKCNSLGRVRLRNNRFNGIVPGEFWGLPRVYLFELEGNSFSGKVSNRIASAYNLS VLKISKNQFSGNLPAEIGFLDKLIEFSASDNLFTGPIPGSLVNLSNLSTLVLDDNELSGGIPSGIQGWKSLNELRLANNRLSGSIPNEIGSLQVLNYLDL SGNHFSGKIPIQLDDLKLNLLNLSNNMLSGALPPLYAKEMYRSSFVGNPGLCGDLEDLCPQEGDPKKQSYLWILRSIFILAGIVFVVGVVWFYFKYQNLK KAKRVVIASKWRSFHKIGFSEFEILDYLKEDNVIGSGGSGKVYKAVLSNGETVAVKKISGESKKKDTSRSSIKDEFEAEVETLGNIRHKNIVRLWCCCNA GDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDAEFGARVADFGVAKVFQGVNKGTESMSVIAGS CGYIAPEYAYTVRVNEKSDIYSFGVVILELVTGRLPIDPEFGEKDLVKWVCTTLVDQNGMDLVIDPKLDSRYKDEISEVLDVGLRCTSSLPIDRPSMRRV VKMLQEAGMGNKPKANKSDGKLSRFYYEVVSDQARIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28440		HSL1	HAESA-like 1 (.1)		Potri.007G135400 [exp]	0	1
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	1.41	0.8514
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	2.82	0.8534
AT1G55730		ATCAX5	cation exchanger 5 (.1.2)		Potri.010G249200 [exp]	3.00	0.8434
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G007600 [exp]	3.46	0.8260
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.018G027300 [exp]	4.00	0.8399
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	7.41	0.8061
AT1G71695			Peroxidase superfamily protein...		Potri.005G195700 [exp]	7.48	0.8194
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	9.94	0.8092
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411300 [exp]	10.24	0.7356
					Potri.003G153266 [exp]	12.00	0.8059

Compare expression of checked genes

Potri.007G135400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.