Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44180 1227 / 0 HD Homeodomain-like transcriptional regulator (.1.2) AT1G28420 862 / 0 HD HB-1 homeobox-1 (.1) AT4G12750 129 / 8e-30 Homeodomain-like transcriptional regulator (.1) AT4G03250 63 / 2e-09 HD Homeodomain-like superfamily protein (.1) AT5G08630 52 / 3e-06 DDT domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G016200 [exp] 2519 / 0 AT5G44180 1322 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Potri.011G057700 [exp] 1088 / 0 AT1G28420 1262 / 0.0 homeobox-1 (.1) Potri.004G048675 [exp] 1044 / 0 AT1G28420 1266 / 0.0 homeobox-1 (.1) Potri.014G173300 [exp] 159 / 8e-39 AT4G12750 1038 / 0.0 Homeodomain-like transcriptional regulator (.1) Potri.009G071700 [exp] 64 / 1e-09 AT4G03250 303 / 5e-97 Homeodomain-like superfamily protein (.1) Potri.001G276800 [exp] 61 / 6e-09 AT4G03250 275 / 2e-86 Homeodomain-like superfamily protein (.1) Potri.004G138900 [exp] 52 / 5e-06 AT5G08630 652 / 0.0 DDT domain-containing protein (.1) Potri.019G008541 [exp] 46 / 0.0003 AT5G08630 683 / 0.0 DDT domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039870 [exp] 1231 / 0 AT5G44180 1398 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10018634 [exp] 1213 / 0 AT5G44180 1391 / 0.0 Homeodomain-like transcriptional regulator (.1.2) Lus10015325 [exp] 1078 / 0 AT1G28420 1273 / 0.0 homeobox-1 (.1) Lus10025454 [exp] 1051 / 0 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10033644 [exp] 192 / 2e-54 AT1G28420 148 / 4e-40 homeobox-1 (.1) Lus10017688 [exp] 189 / 2e-53 AT5G44180 148 / 4e-40 Homeodomain-like transcriptional regulator (.1.2) Lus10015400 [exp] 150 / 2e-40 AT1G28420 166 / 6e-47 homeobox-1 (.1) Lus10013979 [exp] 147 / 4e-39 AT1G28420 161 / 4e-45 homeobox-1 (.1) Lus10012302 [exp] 143 / 9e-34 AT4G12750 911 / 0.0 Homeodomain-like transcriptional regulator (.1) Lus10016078 [exp] 139 / 2e-32 AT4G12750 723 / 0.0 Homeodomain-like transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02791 [poplar] [flax] DDT DDT domain CL0123 [poplar] [flax] HTH PF05066 [poplar] [flax] HARE-HTH HB1, ASXL, restriction endonuclease HTH domain CL0123 [poplar] [flax] PF15612 [poplar] [flax] WHIM1 WSTF, HB1, Itc1p, MBD9 motif 1 CL0123 [poplar] [flax] PF15613 [poplar] [flax] WSD Williams-Beuren syndrome DDT (WSD), D-TOX E motif
Representative CDS sequence Show only first row Show all	>Potri.007G135500.1 pacid=42766048 polypeptide=Potri.007G135500.1.p locus=Potri.007G135500 ID=Potri.007G135500.1.v4.1 annot-version=v4.1 ATGGAGGAAGCTGGTGGTGGTGGTGGTGTGGAGGTGGAAGCGAAGAAGAAGACACCAGGAGAAGGAGAAGGAGAAAGTAAGTCTAAGAGGAAAATGAAAT CTGCTTCCCAGCTTGAGATTTTGGAGAAAACTTATTCAGTGGATACATACCCATCAGAAGCAGCAAGGGCTGAGCTTTCAGTGCAATTAGGACTGTCCGA CCGGCAGTTGCAGATGTGGTTCTGCCATAGGCGTTTGAAGGACAGGAAGGCACCTTTGGTGAAGCGCCCACGTAAGGAGTCACCATCACCAGCAGGGATG CCAGGTGGAGGGGAAATGGGAGTGGTGGCTGAGGTGGGAAATGAACACGGGTCAGGGTCAAGTCCATTTGTGCTTGGTGTGGATCCACGGCGAGCAGTTG GAAGGCCCACTGGGGTGGCTGTTCCAAGAATTAGTGCTGATGTGCAAGCAATGAAGAGGTATTATGAGCCACAGCAGTCTATTGCGGAGCTTAGAGCGGT AGCATTTGTGGAAGCACAGTTGGGGGAGCCTCTGAGAGAGGATGGTCCGATTCTTGGGATGGAGTTTGACCCCTTGCCACCGGATGCATTTGGTGCACCT ATAGGATCAGCAACAACAGGGCAGCAGAAACAATCTGTAAGGATTGAGGCCAACCTATATGAGCGGCCTGATGTAAAACCCATCAAGAGTACTACAAGGA CTCTGCATGAATACCAATTCCTTCCACAGCAGCCAACTGTTAGAGCGGAGGCATATGAAAGAGCTGCCCCTTCATGCCAGTATGGCTCACCTGCTGATGT TCATAATGTGAAGACTGAATCAATATCTGCCACCCTACCATTCATGCATGCAAACAAACAAGTGTCCTCTGGATATGATTTATCAAATCAAGTGCCCAGT CTAAGTCTTATGCCTCAAGAAAGCAGGCAGGGCCATCTCTTGCCATCTACTACAGGAGAGTACGAAACTGTAATACAAAAATGCTCGTTTACAAATATTG GTATGGATGCACAATCTGGTGCTCACCTGGTTACTGCATTGGACAATCCTTATATGTCATCTGACAGGAGAGTAACCCATGACGAGGATGCTTTGCGAAT GCAGAGGAAACGCAAGAGTGAGGAGGCAAGAATAGCACGCGAAGTTGAAGCCCATGAAAAAAGGATTCGAAAAGAGCTCGAAAAGCAAGATATTCTAAGG CGAAAGAGAGAGGAGCAAATGAGGAAAGAAATGGAAAAGCATGACCGTGAGAGGCGGAAGGAAGAAGAGAGGTTATTGCGTGAAAAGCAGCGAGAGGTGG AGAGATACCAGAGGGAGCAAAAGCGTGAACTGGAGCGCAGGGAAAAGTTCTTGCAGAAGGAGTCTATCAGAGTTGAGAAAATGAGACAAAAAGAAGAACT GCGTAGAGAAAAGGAGGCAGCAAGGCAAAAAGCTGCTACTGAGAGGGCAATTGCACGGAGGATGGCAAAAGAGTCAATGGAGCTTATTGATGATGAACGC TTGGAACTCATGGAGATGGCTGCCTCCAGCAAGGGATTGCCTTCGATTATTCCTCTGGACTTTGAAACTTTGCAAAATCTAGATTTATTTCGAGATAAGC TGACTGAGTTCCCTCCCAAATCTGTGCTATTAAAGAGGCCTTTTCTTATTCAACCTTGGAATGATTCTGAGGAGAATGTAGGAAATCTTCTTATGGTTTG GAGGTTCTTAATCACATTTGCGGATGTTCTTGGGATATGGCCATTCACTTTGGATGAGTTTGTCCAAGCTTTTCATGATTATGATTCAAGGCTATTGAGT GAAGTACATGTTGCCCTATTAAAATCCATCATTAAAGACATTGAAGATGTTGCTAGGACACCTGCAACTGGGTTGGGGCCAAATCAAAACGGTGCAGCTA ATCCTGGTGGTGGACATCCTCAGATTGTCGAAGGGGCGTATGCGTGGGGTTTTGATTTACGTAGCTGGCAGCGACACTTAAATCCATTAACTTGGCCTGA AATATTGCGGCAATTCGGTCTTTCTGCAGGTTTTGGGCCACAAATGAAGAAAAGGAATGTTGATCAGGCTTATCTCCGAGATGATAATGAGGGTAATGAT GGTGAAGATGTAATTACTAATTTACGGAATGGAGCAGCCGTTGAAAATGCTGTTTCCATTATGCAAGAAAGGGGATTTTCTAATCCACGCAGATCTAGGC ATCGCTTAACTCCTGGTACTGTTAAATTTGCAGCATTTCATGTTCTCTCTCTTGAGGGGAGCAAGGGTTTGACGATATTAGAAGTAGCAGACAAGATTCA GAAATCTGGGCTGAGGGATCTTACAACAAGCAAGACACCTGAAGCGTCAATTGCTGCTGCTTTGTCAAGGGATTCTAAACTTTTTGAGAGGACGGCTCCT TCAACATATTGTATACGTCCTGCATACAGGAAGGACCCAGCTGATACTGATACAGTACTTTCTGCTGCCAGAGAAAGAATTAGGACATTTAAAAGTGGTA TTGTAGACGGAGAAGATGCTGATGATGCTGAAAGAGATGAAGATTCTGAAAGTGATGTGGCAGAGGATCATGAGATTGATGATTTAGGTACTGGATTGAA TTCTAAGAAAGTGGCTCATGATTCTCCTGAAACTAATGAATTTAATGGGAAAACAGTCTTGGGGAATGGAAAGGAGAGTGGTGGTCTCAAAACTCCACAA GTCCGCCTTGAGAAAGTCAGAGCGGGTTTGACTTCCCTACATTCTGAAGGCACTAATGAGTTAAAGGGTGCTGGTTCTTCAATAGATGAATCTGTAGATG TTGCTGAAATCCACACCATTCCTGATCAAGATGTAGATATTGATGAAAACAACCTGGGTGAGCCATGGGTTCAAGGACTTGTAGAAGGGGAATACTCTGA TCTGAGTGTTGAGGAGCGTCTAAATGCGCTTGTTGCATTGATTGGTGTGGCAATTGAAGGAAACTCCATCCGTGTTGCCCTTGAGGAACGCTTAGAAGCA GCAAATGCTCTAAAGAAGCAAATGTGGGCAGAAGCACAACTTGATAAACGTCGTATGAAGGAAGAGTTTGTCACGAGGACACAATATTCATCATTTACAG GGAACAAGATGGAACCTAACCAAACAATTTCTGCCACAGAGGGTAGACAAAGCCCAATGGTAAGTGTTGATGACAGAAATAACGGGATGCCTGTGAATGT ATCTGTTCAGCAAGAACAGTTAAGTGACCAGCAGAGTGACATGAATTATCTAAATAATATGCCATTTGAAGGAAACATGCAAATGCAAGATTTATCTGCC GGTCCAGATAATCTGACATATCAGCAAGCAGGACATATTGCTGAAAAATCACGTTCACAGTTAAAATCTGTTATTGGTCACAGGGCAGAAGAGATGTATG TATATAGATCATTGCCCCTTGGTCAGGATCGCAGGCGTAATCGATACTGGCAGTTCACCACATCTGCTTCCCGCAATGATCCTGGCTGTGGCAGGATCTT CGTTGAGTTACATGATGGTCGCTGGAGGCTTATTGATTATGAAGAGGGTTTTGATACTCTGCTGTCATCTTTGGATGTACGTGGGGTTAGGGAATCCCAT TTGCATGCAATGCTGCAAAAGATTGAGGTGCCTTTCAAGGAAACTATGAGGAGGAGAATGCTACGTGCTAACACCGAAGGACAAAGCAAAGATCCAATCA AAGCTGAAGCTGTTGAAATGACTGCTGGCCCTGAATCTGGCACTGGTATGGATAGTCCACGCAGCACTGTGTGTGTTCCAGATTCTGATATGTCTGAGAC CTCAACATCTTTCACAATTGAGCTTGGAAGGAATGAAATTGAAAAAAATCACACCTTGAAGAGATTTCAAGATTTTGAGAAGTGGATGTGGAAAGAATGC TTCAAGTCTTCAGTCTTGTGTGCCATGAAGTATGAGAAGAAAAGATGCACGCAACTGCTTGGTGTTTGTGATTACTGCCACGACACTTACTTTTTTGAAG ACAACCATTGTCCTTCTTGCCACAAGACGCACGCCTCTCAGACTGGCTTGAATTTTTCTGAACATGTGGCTCATTGTGAAAGGAAGCTAAAGATGGACCC TGACAGTGCTTTGTGTAGCTTATCTTTTCCACCGAGGATCAGATTGTTAAAATCGCTACTAGCTTTGATAGAGGTTTCGGTTCTGCCAGAAGCTCTCCAA CCTGTTTGGACCAATGGCTACCGGAAATCTTGGGGTATGAAGCTGCAGTCCTCATCATGTGTTGACGACCTACTTCAGATTCTGACACTGTTGGAGATTG GCATGAAGAGGGATTATTTGTCCTCAAACTATGAAACCAGCAGTGAACTTTTGAGCTCATCTGACCCATCTGGATGTGCTGCTCATGATTCTTTCAATAC AGGAACTGCTCCTGTTCTTCCATGGTTACCACAAACAACAGCTGCTGTAGCTCTAAGGGTCATTGAATTTGATGCATCCATCTCATACATGCTGCATCAG AAACTGGAGTCTCAGAAGGACAGGAGCGCTGGGAACTTTATTAAGCTGCCATCCAAGTATGCTGTCATGAAGTACACCCCAGATAATGAAACTACAGAAA TCCAGCATCAAGCTGGGTTACTCCAAGAAGATGATTGGGTTGATGTAGGGATTGGGTTAGCTGGGTTGGGCCGTGAACAAGGGATCCGGGGCAGGGGTCG AGGTCGCACTCGTGGTGGGAGATCACAAACAAGGATTATTGGTTCCAGATCTGAATCCAGCAAGAGAAGTGCTTCCAGAAGTAGTGACAGATTAGAGAAG GTATTGTCATGGACGGGACGACCTCGTGGCCGTGGAGGACGTAAAAGTGGACGTCGCAGCATTAGAAGTAGGCAAAAAGCAGTCAAGAAAGCGGCTGAGA TCATTCCTGAGAGAAAGATCCCCAAAAAAACTCTGTATGAACAATCGACAAGACGCATGGGAAGGCATGTCCGGAATGGTGATGAAACAAGGTTCCACAC GGAGGATGCTGAAAATGCCAGCAGCTCTGAAAGATCCGAGTACAATGATGAAAATGAAAATATTCCTGCATCAGGAGATGAATATGATGACCAGGTAGTG GATGACTATGCAGGTGGTTTTAATGGCAAGTCTGATGACTTGCTGGAGGGAAGTGATTATAATATTGACAGCAATGAAGAAGATGATGATGATGATGCCA TGAATGAAGATGAAGATGAACATGGGGACTTGGATGTTGAGGAATACATCAACAGGGACTCCGATGAGGATGGAATCAGGGATGGAGTACAAAATGGGGC CCAAGATGGTACCGAATCTTCATCTTCAGATTTCAGTGACTAG
AA sequence Show only first row Show all	>Potri.007G135500.1 pacid=42766048 polypeptide=Potri.007G135500.1.p locus=Potri.007G135500 ID=Potri.007G135500.1.v4.1 annot-version=v4.1 MEEAGGGGGVEVEAKKKTPGEGEGESKSKRKMKSASQLEILEKTYSVDTYPSEAARAELSVQLGLSDRQLQMWFCHRRLKDRKAPLVKRPRKESPSPAGM PGGGEMGVVAEVGNEHGSGSSPFVLGVDPRRAVGRPTGVAVPRISADVQAMKRYYEPQQSIAELRAVAFVEAQLGEPLREDGPILGMEFDPLPPDAFGAP IGSATTGQQKQSVRIEANLYERPDVKPIKSTTRTLHEYQFLPQQPTVRAEAYERAAPSCQYGSPADVHNVKTESISATLPFMHANKQVSSGYDLSNQVPS LSLMPQESRQGHLLPSTTGEYETVIQKCSFTNIGMDAQSGAHLVTALDNPYMSSDRRVTHDEDALRMQRKRKSEEARIAREVEAHEKRIRKELEKQDILR RKREEQMRKEMEKHDRERRKEEERLLREKQREVERYQREQKRELERREKFLQKESIRVEKMRQKEELRREKEAARQKAATERAIARRMAKESMELIDDER LELMEMAASSKGLPSIIPLDFETLQNLDLFRDKLTEFPPKSVLLKRPFLIQPWNDSEENVGNLLMVWRFLITFADVLGIWPFTLDEFVQAFHDYDSRLLS EVHVALLKSIIKDIEDVARTPATGLGPNQNGAANPGGGHPQIVEGAYAWGFDLRSWQRHLNPLTWPEILRQFGLSAGFGPQMKKRNVDQAYLRDDNEGND GEDVITNLRNGAAVENAVSIMQERGFSNPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTILEVADKIQKSGLRDLTTSKTPEASIAAALSRDSKLFERTAP STYCIRPAYRKDPADTDTVLSAARERIRTFKSGIVDGEDADDAERDEDSESDVAEDHEIDDLGTGLNSKKVAHDSPETNEFNGKTVLGNGKESGGLKTPQ VRLEKVRAGLTSLHSEGTNELKGAGSSIDESVDVAEIHTIPDQDVDIDENNLGEPWVQGLVEGEYSDLSVEERLNALVALIGVAIEGNSIRVALEERLEA ANALKKQMWAEAQLDKRRMKEEFVTRTQYSSFTGNKMEPNQTISATEGRQSPMVSVDDRNNGMPVNVSVQQEQLSDQQSDMNYLNNMPFEGNMQMQDLSA GPDNLTYQQAGHIAEKSRSQLKSVIGHRAEEMYVYRSLPLGQDRRRNRYWQFTTSASRNDPGCGRIFVELHDGRWRLIDYEEGFDTLLSSLDVRGVRESH LHAMLQKIEVPFKETMRRRMLRANTEGQSKDPIKAEAVEMTAGPESGTGMDSPRSTVCVPDSDMSETSTSFTIELGRNEIEKNHTLKRFQDFEKWMWKEC FKSSVLCAMKYEKKRCTQLLGVCDYCHDTYFFEDNHCPSCHKTHASQTGLNFSEHVAHCERKLKMDPDSALCSLSFPPRIRLLKSLLALIEVSVLPEALQ PVWTNGYRKSWGMKLQSSSCVDDLLQILTLLEIGMKRDYLSSNYETSSELLSSSDPSGCAAHDSFNTGTAPVLPWLPQTTAAVALRVIEFDASISYMLHQ KLESQKDRSAGNFIKLPSKYAVMKYTPDNETTEIQHQAGLLQEDDWVDVGIGLAGLGREQGIRGRGRGRTRGGRSQTRIIGSRSESSKRSASRSSDRLEK VLSWTGRPRGRGGRKSGRRSIRSRQKAVKKAAEIIPERKIPKKTLYEQSTRRMGRHVRNGDETRFHTEDAENASSSERSEYNDENENIPASGDEYDDQVV DDYAGGFNGKSDDLLEGSDYNIDSNEEDDDDDAMNEDEDEHGDLDVEEYINRDSDEDGIRDGVQNGAQDGTESSSSDFSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Potri.008G186900 [exp]	1.41	0.8786
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	2.23	0.8295	CYP71.3
AT5G22010		ATRFC1	replication factor C 1, replic...		Potri.001G213900 [exp]	3.46	0.8289
AT2G39260			binding;RNA binding (.1)		Potri.010G216100 [exp]	3.74	0.8359
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Potri.010G019150 [exp]	6.70	0.8320
AT5G44180	HD		Homeodomain-like transcription...		Potri.017G016200 [exp]	7.07	0.7936
AT3G28030		UVR1, UVH3	UV REPAIR DEFECTIVE 1, ULTRAVI...		Potri.017G070500 [exp]	7.21	0.8300
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.001G289200 [exp]	7.48	0.8101	Pt-TOR.1
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	11.61	0.7984
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	14.49	0.7350

Compare expression of checked genes

Potri.007G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.