Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 259 / 3e-85 DNAJ heat shock family protein (.1) AT2G20550 244 / 6e-80 HSP40/DnaJ peptide-binding protein (.1.2) AT4G28480 243 / 1e-78 DNAJ heat shock family protein (.1.2) AT3G08910 238 / 2e-77 DNAJ heat shock family protein (.1) AT5G01390 233 / 4e-75 DNAJ heat shock family protein (.1.2.3.4) AT1G59725 223 / 6e-71 DNAJ heat shock family protein (.1) AT1G10350 221 / 3e-70 DNAJ heat shock family protein (.1) AT5G25530 219 / 2e-69 DNAJ heat shock family protein (.1) AT3G47940 202 / 8e-63 DNAJ heat shock family protein (.1) AT1G44160 153 / 8e-44 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G136600 [exp] 497 / 2e-180 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1) Potri.007G136000 [exp] 426 / 1e-152 AT2G20560 256 / 5e-85 DNAJ heat shock family protein (.1) Potri.007G136400 [exp] 405 / 1e-143 AT2G20560 268 / 1e-89 DNAJ heat shock family protein (.1) Potri.007G135800 [exp] 402 / 5e-143 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1) Potri.007G135900 [exp] 370 / 1e-130 AT2G20560 248 / 6e-82 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 286 / 2e-95 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 273 / 2e-90 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 273 / 2e-90 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 269 / 7e-89 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017687 [exp] 247 / 3e-80 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 246 / 8e-80 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 241 / 8e-78 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10005033 [exp] 233 / 6e-75 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 232 / 2e-74 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 228 / 4e-73 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10036668 [exp] 226 / 5e-72 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013280 [exp] 223 / 2e-70 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10041254 [exp] 206 / 1e-64 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 204 / 5e-64 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G136133.1 pacid=42765558 polypeptide=Potri.007G136133.1.p locus=Potri.007G136133 ID=Potri.007G136133.1.v4.1 annot-version=v4.1 ATGACTAGTCATAGTAGGGCAGCAGATGATGAATCTTTTGAAAACAAAAGAGGAATCTTTTCAAGTTATTTTTACCGTCTTGCTGAATCTTTCGGGTTTA ATAGCCCAAATCAAAACAGGAGAGGAGCAGAGTTCTCCAATAACAGAGATGGTGATGGTATCGTTAGATCTTTTGAAGAAAGTGTCGTGGTTAGTGCTCC TGGAAAAGATCCTGCAATTAAGCACACCCTGTCTTGTAGTCTTGAAGAGCTTTATCAAGGGGCTACCAAGAGGGTAAAAATAACTAGACAAGTAGCTGAT CGAAGGGGCTTGACCAGGGAAATAGAAGAGATTCTAACCATTGACACAAAGCCTGGTTGGAAGAAAGGCACGAAGATCACTTTCGAAGAGAAAGGGAACG AAAGACCAAATGTAACACCTGCTGATGTTGTCTTCATTGTTGATGAAAAACCCCACTCTGAGTTTACTCGTGATGGAAATGACTTGATCGTCACTCGAAG GATTTCTGTAACGGAAGCCTTTACAGGCTACACTGTCCATCTTAAAACCTTAGATGGCAGGAATTTAACCCTTCCGATCAATGATGTGATCCATCCCAAC TATCAGAAGGTTGTCCCGAATGAAGGGATGCCGATCCTCGGCGACCCAACAAAGAGAGGGATTTTGAAAATCAAGTTTGATATCAGGTTCCCAACAAGGG TTAATGCAGAGCAGAAGGCAGGAATCAGGAGACTCTTTGGTCTTGAGATCTCTATGTCAGCATGTGAGACATCTCCTATGGGAAGGAAGCCTTTGGATTG GTATCCTCTTGCTGCAGTTTGTGTTTGTGTTTGTGTTTGTGTTTGTGTTTGTCTGTGTCTGTGTGAAGTATGGCATCTTTCTGAGATCGATGTTGAATGC AGGTTTTGA
AA sequence Show only first row Show all	>Potri.007G136133.1 pacid=42765558 polypeptide=Potri.007G136133.1.p locus=Potri.007G136133 ID=Potri.007G136133.1.v4.1 annot-version=v4.1 MTSHSRAADDESFENKRGIFSSYFYRLAESFGFNSPNQNRRGAEFSNNRDGDGIVRSFEESVVVSAPGKDPAIKHTLSCSLEELYQGATKRVKITRQVAD RRGLTREIEEILTIDTKPGWKKGTKITFEEKGNERPNVTPADVVFIVDEKPHSEFTRDGNDLIVTRRISVTEAFTGYTVHLKTLDGRNLTLPINDVIHPN YQKVVPNEGMPILGDPTKRGILKIKFDIRFPTRVNAEQKAGIRRLFGLEISMSACETSPMGRKPLDWYPLAAVCVCVCVCVCVCLCLCEVWHLSEIDVEC RF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20560			DNAJ heat shock family protein...		Potri.007G136133 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.007G136000 [exp]	2.44	0.9238
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024900 [exp]	2.82	0.9161
AT2G20560			DNAJ heat shock family protein...		Potri.007G136600 [exp]	3.31	0.9384
AT2G20560			DNAJ heat shock family protein...		Potri.007G135900 [exp]	3.74	0.8851
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024800 [exp]	10.53	0.8703
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Potri.004G108200 [exp]	12.24	0.8482
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.012G103500 [exp]	18.65	0.8854	NAC062
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	20.92	0.7863
AT3G18670			Ankyrin repeat family protein ...		Potri.007G110000 [exp]	22.13	0.9001
AT3G05620			Plant invertase/pectin methyle...		Potri.005G022700 [exp]	24.97	0.8983

Compare expression of checked genes

Potri.007G136133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.