Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 268 / 2e-89 DNAJ heat shock family protein (.1) AT2G20550 265 / 5e-89 HSP40/DnaJ peptide-binding protein (.1.2) AT3G08910 252 / 2e-83 DNAJ heat shock family protein (.1) AT4G28480 246 / 2e-80 DNAJ heat shock family protein (.1.2) AT5G01390 241 / 8e-79 DNAJ heat shock family protein (.1.2.3.4) AT5G25530 232 / 4e-75 DNAJ heat shock family protein (.1) AT1G59725 221 / 9e-71 DNAJ heat shock family protein (.1) AT1G10350 217 / 3e-69 DNAJ heat shock family protein (.1) AT3G47940 214 / 4e-68 DNAJ heat shock family protein (.1) AT1G44160 152 / 3e-44 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G135800 [exp] 439 / 3e-158 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1) Potri.007G136133 [exp] 404 / 2e-143 AT2G20560 260 / 2e-85 DNAJ heat shock family protein (.1) Potri.007G136600 [exp] 401 / 5e-143 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1) Potri.007G136000 [exp] 398 / 5e-142 AT2G20560 256 / 5e-85 DNAJ heat shock family protein (.1) Potri.007G135900 [exp] 383 / 2e-136 AT2G20560 248 / 6e-82 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 302 / 2e-102 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 282 / 1e-94 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 280 / 8e-94 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 277 / 1e-92 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017687 [exp] 266 / 3e-88 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 263 / 3e-87 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 259 / 2e-85 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10005033 [exp] 249 / 5e-82 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 248 / 2e-81 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 235 / 1e-76 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10036668 [exp] 226 / 9e-73 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013280 [exp] 223 / 4e-71 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10021961 [exp] 215 / 1e-68 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10008109 [exp] 227 / 3e-68 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G136400.1 pacid=42766288 polypeptide=Potri.007G136400.1.p locus=Potri.007G136400 ID=Potri.007G136400.1.v4.1 annot-version=v4.1 ATGACTAGTCAGAGTAGGTCAGCTGATGATATCTTTGCTGGATTTTTCGGGTCTAATAGCCCAAATCAAAACAGGAGAGAAACAGGGATCTCCAGTAGGT CAGCTGATGATATCTTTGCTGGATTTTTCGGGTCTAATAGCCCAAATCAAAACAGGAGAGGAACAGGGATCTCCAGTAACTTAAATGGCGATGATAATGA TATCTCTAGATCCTTTGAACAAAGCTTCGGGGTTAGTGCTCCTGGAAAAGATCCTGCAATTAAGCACACCCTGCCTTGTAGTCTTGAAGAGCTTTATCAA GGGGCTACCAAGAGGGTAAAAATAACTAGAGAAGTAGCTGATCGAAGTGGCTTGACCAGGGAAACAGAGGAGATTCTAACCATTGACACAAAGCCTGGTT GGAAGAAAGGCACGAAGATCACTTTCGAAGAGAAAGGGAACGAAAGACCAAATATAACACCTGCTGATGTTGTCTTCATTGTTGATGAAAAACCCCACTC TGAGTTTACTCGTGATGGAAATGACTTGATCGTCACTCGAAGGATTTCTGTAACTGAAGCCTTTACAGGCTACACTGTCCATCTTATTACCTTAGATGGC AGGAATTTAACCCTTCCGATCAATGATGTGATCCATCCCAACTATCAGAAGTTTGTCCCGAATGAAGGGATGCCGATCCTCGGCGACCCAACAAAGAGAG GGATTTTGAAAATCAAGTTTGATATCAGGTTCCCAACAAGGGTTAATGCAGAGCAGAAGGCAGGAATCAGGAGACTCTTTGGTCCTTGA
AA sequence Show only first row Show all	>Potri.007G136400.1 pacid=42766288 polypeptide=Potri.007G136400.1.p locus=Potri.007G136400 ID=Potri.007G136400.1.v4.1 annot-version=v4.1 MTSQSRSADDIFAGFFGSNSPNQNRRETGISSRSADDIFAGFFGSNSPNQNRRGTGISSNLNGDDNDISRSFEQSFGVSAPGKDPAIKHTLPCSLEELYQ GATKRVKITREVADRSGLTRETEEILTIDTKPGWKKGTKITFEEKGNERPNITPADVVFIVDEKPHSEFTRDGNDLIVTRRISVTEAFTGYTVHLITLDG RNLTLPINDVIHPNYQKFVPNEGMPILGDPTKRGILKIKFDIRFPTRVNAEQKAGIRRLFGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20560			DNAJ heat shock family protein...		Potri.007G136400 [exp]	0	1
AT3G52490			Double Clp-N motif-containing ...		Potri.016G071800 [exp]	1.73	0.8807
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.012G018700 [exp]	4.00	0.8766
AT2G26520			unknown protein		Potri.009G106300 [exp]	5.09	0.8403
AT1G35560	TCP	TCP23	TCP family transcription facto...		Potri.013G110700 [exp]	6.16	0.8335
AT4G31970		CYP82C2, JAH1	"cytochrome P450, family 82, s...		Potri.014G037900 [exp]	8.77	0.8415	Pt-CYP82.16
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G249900 [exp]	11.48	0.8410
AT3G52490			Double Clp-N motif-containing ...		Potri.010G241600 [exp]	12.48	0.8593
AT2G02820	MYB	ATMYB88	myb domain protein 88 (.1.2)		Potri.010G093000 [exp]	14.07	0.8461	MYB124.2,MYB196
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G028000 [exp]	15.49	0.8600
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207479 [exp]	17.17	0.8035

Compare expression of checked genes

Potri.007G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.