Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20560 261 / 5e-87 DNAJ heat shock family protein (.1) AT2G20550 243 / 1e-80 HSP40/DnaJ peptide-binding protein (.1.2) AT4G28480 241 / 7e-79 DNAJ heat shock family protein (.1.2) AT3G08910 235 / 9e-77 DNAJ heat shock family protein (.1) AT5G01390 233 / 6e-76 DNAJ heat shock family protein (.1.2.3.4) AT1G59725 223 / 5e-72 DNAJ heat shock family protein (.1) AT1G10350 222 / 3e-71 DNAJ heat shock family protein (.1) AT5G25530 216 / 4e-69 DNAJ heat shock family protein (.1) AT3G47940 201 / 2e-63 DNAJ heat shock family protein (.1) AT1G44160 152 / 4e-44 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G136133 [exp] 499 / 0 AT2G20560 260 / 2e-85 DNAJ heat shock family protein (.1) Potri.007G136000 [exp] 427 / 7e-154 AT2G20560 256 / 5e-85 DNAJ heat shock family protein (.1) Potri.007G136400 [exp] 401 / 4e-143 AT2G20560 268 / 1e-89 DNAJ heat shock family protein (.1) Potri.007G135800 [exp] 397 / 8e-142 AT2G20560 261 / 6e-87 DNAJ heat shock family protein (.1) Potri.007G135900 [exp] 367 / 3e-130 AT2G20560 248 / 6e-82 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 285 / 5e-96 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 274 / 5e-92 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 270 / 2e-90 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 268 / 2e-89 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017687 [exp] 247 / 2e-81 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 246 / 8e-81 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 242 / 4e-79 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10005033 [exp] 234 / 6e-76 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 232 / 3e-75 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 229 / 4e-74 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10036668 [exp] 226 / 5e-73 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10013280 [exp] 224 / 1e-71 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10041254 [exp] 204 / 1e-64 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 202 / 5e-64 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G136600.1 pacid=42766449 polypeptide=Potri.007G136600.1.p locus=Potri.007G136600 ID=Potri.007G136600.1.v4.1 annot-version=v4.1 ATGACTAGTCATAGTAGGGCAGCAGATGATGAATCTTTTGAAAACAAAAGAGGAATCTTTTCAAGTTATTTTTACCGTCTTGCTGAATCTTTCGGGTTTA ATAGCCCAAATCAAAACAGGAAAGGAACAGAGTTCTCCAATAACAGAGATGGTGATGGTATCGTTAGATCTTTTGAAGAAAGTGTCGTGGTTAGTGCTCC TGGAAAAGATCCTGCAATTAAGCACACCCTGTCTTGTAGTCTTGAAGAGCTTTATCAAGGGGCTACCAAGACGGTAAAAATAACTAGACAAGTAGCTGAT CGAAGGGGCTTGACCAGGGAAATAGAGGAGATTCTAACCATTGACACGAAGCCTGGTTGGAAGAAAGGCACGGAGATCACTTTTGAAGAGAAAGGGAACG AAAGACCAAATGTAACACCTGCTGATGTTGTCTTCATTGTTGATGAAAAACCCCACTCTGAGTTTACTCGTGATGGAAATGACTTGATCGTCACTCGAAG GATTTCTGTAACTGAAGCCTTTACAGGCTACACTGTCCATCTTACAACCTTGGATGGCAGGAATTTAACCCTTCCGATCAATGATGTGATCCATCCCAAC TATCAGAAGGTTGTCCCGAATGAAGGGATGCCCATCCTCGGCGACCCAACAAAGAGAGGGATTTTGAAAATCAAGTTTGATATCAGGTTCCCAACAAGGG TTAATGCAGAGCAGAAGGCAGGAATCAGGAGACTCTTTGGTGCTTGA
AA sequence Show only first row Show all	>Potri.007G136600.1 pacid=42766449 polypeptide=Potri.007G136600.1.p locus=Potri.007G136600 ID=Potri.007G136600.1.v4.1 annot-version=v4.1 MTSHSRAADDESFENKRGIFSSYFYRLAESFGFNSPNQNRKGTEFSNNRDGDGIVRSFEESVVVSAPGKDPAIKHTLSCSLEELYQGATKTVKITRQVAD RRGLTREIEEILTIDTKPGWKKGTEITFEEKGNERPNVTPADVVFIVDEKPHSEFTRDGNDLIVTRRISVTEAFTGYTVHLTTLDGRNLTLPINDVIHPN YQKVVPNEGMPILGDPTKRGILKIKFDIRFPTRVNAEQKAGIRRLFGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20560			DNAJ heat shock family protein...		Potri.007G136600 [exp]	0	1
AT2G20560			DNAJ heat shock family protein...		Potri.007G136000 [exp]	2.44	0.9430
AT2G20560			DNAJ heat shock family protein...		Potri.007G136133 [exp]	3.31	0.9384
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.012G017800 [exp]	6.55	0.9514
AT1G47271			Cystathionine beta-synthase (C...		Potri.005G228300 [exp]	8.00	0.9475
AT5G13180	NAC	VNDIP2, ANAC083...	VND-interacting 2, NAC domain ...		Potri.012G103500 [exp]	8.48	0.9170	NAC062
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061300 [exp]	12.32	0.9440
AT3G17730	NAC	ANAC057	NAC domain containing protein ...		Potri.012G038100 [exp]	12.72	0.9444	NAC020
AT2G37590	DOF	AtDof2. 4, ATDO...	DNA binding with one finger 2....		Potri.006G084200 [exp]	16.15	0.9212	Pt-DOF2.3
AT5G41470			Nuclear transport factor 2 (NT...		Potri.001G100500 [exp]	17.32	0.9432
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.003G024900 [exp]	18.22	0.8877

Compare expression of checked genes

Potri.007G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.