Plant FIBer expression Database

Potri.007G137200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20580 1358 / 0 RPN1A, AtRPN1a 26S proteasome regulatory subunit S2 1A (.1)
AT4G28470 1314 / 0 RPN1B, AtRPN1b 26S proteasome regulatory subunit S2 1B (.1)
AT4G08140 109 / 2e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G014800
[exp]
1514 / 0 AT2G20580 1399 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039885
[exp]
1379 / 0 AT2G20580 1488 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
Lus10002169
[exp]
1372 / 0 AT2G20580 1476 / 0.0 26S proteasome regulatory subunit S2 1A (.1)
PFAM info
Representative CDS sequence
>Potri.007G137200.1 pacid=42764964 polypeptide=Potri.007G137200.1.p locus=Potri.007G137200 ID=Potri.007G137200.1.v4.1 annot-version=v4.1
ATGGCGCCGGAAACGAACAAGGCGAGTGGCAGCGGAGGTGCAACCAAAAACGATGAGCCGGTGAAGGCGCCGCCGTCGAAGAAGAAAGAGGAGAAGAAAG
ACGACGATTTATCGGAGGAGGACTTGGCATTGAAGCAGCAATTGGAGTTGTATGTGGAAAGAGTTCAAGATCCTGAACCTGGAGTTCAAAAGCTTGCTCT
TGAGAGTTTGAGACAGGAAATTCGAAGCTCAACGAGTTCAATGACTTCAGTTCCAAAGCCATTGAAGTTTCTTCGACCACATTATGGAACCTTAAAAGCA
CATTATGAAAAAATGTCTGAAGCCGATCTGAAGAAATACTTGGCAGATATACTCTCAGTTTTGGCGCTGACCATGTCTGCAGAGGGAGAACGGGAAAGCT
TAAAATACAGATTGTTGGGTTCAGAGGGTGATATTGGTTCATGGGGCCATGAGTATGTAAGGAATTTGGCTGGAGAAATTGCTCAAGAGTACACAAAGCG
ACAGAGTGAAGAGGCCTCAAATGATGATCTGATTGAGCTTGTACAACAGATTGTTGCATTTCACATGAAGCACAATGCTGAACCTGAAGCCGTGGACCTT
TTAATGGAGGTTGAAGACCTTAATATTTTAAGTAAGTATGTGGACAAAACAAATTTCAAGAGGACTTGTCTCTACCTCACCAGTGCAGCAAAATACCTTC
CTGGACCAGATGATTTGGTAGTTCTGAAAATAGCATATGAGATATATATAAAATTTACGGAGTATGCAAGCGCACTTCAGATTGCATTATTCCTCAATGA
CTTGCAGTATATCAAGCAGGTCTATACTTCTTGTGATGATGTGCAGCAAAAGAAACAATTTTCTTACATCCTTGCTCGACATGGTACTGCTTTTGAACTT
GATGATGATATTGCTTCAGATGATATAGACAGAGAAGTATTGGAGGAAATAATCAACAACACCAAATTAAGTGAGGGTTACCTTACCCTTGCTCGTGATA
TTGAGGTCATGGAGCCCAAATCTCCTGAAGATATCTATAAGGCACACTTGCTTGATGGCCGGGCTAGTGCTGGTTCTAGTGTTGATTCAGCCAAACAGAA
TTTGGCTGCTACATTTGTTAACGCATTTGTAAATGCAGGTTTTGGACAGGATAAGTTAATGACACCTCCAACAGACTCTTCAAGTGGTGGTTCAGGAAAT
TGGCTTTTCAAGAATAAAGAACATGGGAAGACCAGTGCTGCAGCAAGCCTGGGTATGATTTTAATGTGGGATGTTGACTCTGGGCTCGCTCAGCTTGATA
AGTATTTCCACAGCAATGACAACCATGTGATTTCTGGTGCCCTACTAGGGGTTGGAATTGTCAATTGTGGTATCAGAAACGACTGTGATCCTGCCTTGGC
ACTTCTTGATGATTTTGTTGATAAAGAAGAACCATCTATCCGAATTGGTGCAATAATGGGGCTAGGAATTGCATATGCTGGTACTCAGAATGAGCAGATA
TGCAGGAAATTGTCCCTGGTACTTAATGATGCAAAAGCTCCACTTGATGTAATAGCATTTGCTGCGATCTCATTGGGCTTGGTTTGTGTGGGTTCCTGCA
ATGAAGTGGTTGCACATGCTATTATATTGTCGTTGATGGAGAGGAGCAAGTCAGACTTGCAGGACCCCCTTACTCGATTTTTGCCACTTGGCCTTGGTCT
TCTATATCTTGGGAAGCAGGAAAGTGTGGAGGCCACAGCAGAAGTGTCCAAGACATTTGATGAGAAAATAAGAAAGTATTGTTATATGACACTGCTTTCC
TGTGCCTATGCAGGCACTGGGAATGTTCTTAAGGTTCAAAACCTTCTTGGTCGTTGTGCTGAAATCCTTGAGAAAGGCGAAACTCACCAGGGACCAGCTG
TTCTTGGGATTGCTATGATAGCAATGGCTGAGGAGTTGGGCCTTGAAATGGCAATTCGCTCATTGGAACATCTGTTACAATATGGACAGCAGAATATCCG
TAGAGCAGTTCCTTTGGCCCTTGGACTCCTCTGTATATCAAACCCTAAGGTTAATGTTATGGACACATTAAGTAGACTTAGCCACGATACAGATTCAGAA
GTTGCAATGGCTGCGGTTATTTCCTTAGGTTTGATGGGTGCTGGAACTAACAATGCTCGCATAGCTGGAATGCTTCGCAATCTTTCCAGCTATTATTACA
AAGATTCCAGCCTTCTTTTCTGTGTGCGAATTGCCCAAGGTCTGGTACACTTGGGGAAGGGCTTATTGACCCTCAATCCATATCATTCTGATCGCTTCTT
ACTATCACCGACTGCACTTGCTGGTCTAATAACAATGCTTCATGCCTGTCTTGATATGAAAGCGATCATTTTTGGGAAATATCACTATGTCCTCTACTTC
CTTGTTCTAGCAATGCAGCCAAGAATGTTGTTGACAGTGGATGAGAATCTGAAGCCTTTACCTGTACCTGTTCGAGTGGGACAGGCAGTTGATGTTGTTG
GTCAAGCAGGAAGACCCAAGACCATTACTGGTTTCCAGACCCACTCAACCCCAGTTCTTCTAGCTGCTGGTGATCGGGCTGAACTGGCTACCGAGAAGTA
TATTCCTCTTACAGCCATTCTTGAAGGGTTTGTCATATTGAAGGAGAACCCAGATTACAGAGAAGATCAGTAG
AA sequence
>Potri.007G137200.1 pacid=42764964 polypeptide=Potri.007G137200.1.p locus=Potri.007G137200 ID=Potri.007G137200.1.v4.1 annot-version=v4.1
MAPETNKASGSGGATKNDEPVKAPPSKKKEEKKDDDLSEEDLALKQQLELYVERVQDPEPGVQKLALESLRQEIRSSTSSMTSVPKPLKFLRPHYGTLKA
HYEKMSEADLKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYTKRQSEEASNDDLIELVQQIVAFHMKHNAEPEAVDL
LMEVEDLNILSKYVDKTNFKRTCLYLTSAAKYLPGPDDLVVLKIAYEIYIKFTEYASALQIALFLNDLQYIKQVYTSCDDVQQKKQFSYILARHGTAFEL
DDDIASDDIDREVLEEIINNTKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGSSVDSAKQNLAATFVNAFVNAGFGQDKLMTPPTDSSSGGSGN
WLFKNKEHGKTSAAASLGMILMWDVDSGLAQLDKYFHSNDNHVISGALLGVGIVNCGIRNDCDPALALLDDFVDKEEPSIRIGAIMGLGIAYAGTQNEQI
CRKLSLVLNDAKAPLDVIAFAAISLGLVCVGSCNEVVAHAIILSLMERSKSDLQDPLTRFLPLGLGLLYLGKQESVEATAEVSKTFDEKIRKYCYMTLLS
CAYAGTGNVLKVQNLLGRCAEILEKGETHQGPAVLGIAMIAMAEELGLEMAIRSLEHLLQYGQQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSE
VAMAAVISLGLMGAGTNNARIAGMLRNLSSYYYKDSSLLFCVRIAQGLVHLGKGLLTLNPYHSDRFLLSPTALAGLITMLHACLDMKAIIFGKYHYVLYF
LVLAMQPRMLLTVDENLKPLPVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYIPLTAILEGFVILKENPDYREDQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20580 RPN1A, AtRPN1a 26S proteasome regulatory subu... Potri.007G137200
[exp]
0 1
AT3G20630 PER1, ATUBP14, ... TITAN6, phosphate deficiency r... Potri.011G125800
[exp]
1.00 0.8020 Pt-UBP14.1
AT5G42970 FUS4, EMB134, C... FUSCA 8, FUSCA 4, EMBRYO DEFEC... Potri.002G263200
[exp]
4.89 0.7374
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065600
[exp]
6.24 0.7854 Pt-LOS1.2
AT2G32730 26S proteasome regulatory comp... Potri.017G054400
[exp]
7.34 0.7430
AT1G63940 MDAR6 monodehydroascorbate reductase... Potri.001G099600
[exp]
9.84 0.6845
AT2G32730 26S proteasome regulatory comp... Potri.001G314300
[exp]
13.85 0.6963
AT4G16830 Hyaluronan / mRNA binding fami... Potri.014G049300
[exp]
14.00 0.7069
AT2G29690 ATHANSYNAB, ASA... anthranilate synthase 2 (.1) Potri.009G044300
[exp]
15.09 0.7781
AT2G44580 zinc ion binding (.1) Potri.001G346900
[exp]
16.00 0.7243
AT4G32730 MYB ATMYB3R-1, PC-M... C-MYB-LIKE TRANSCRIPTION FACTO... Potri.018G038000
[exp]
22.22 0.7427 MYB222

Potri.007G137200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.