Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44200 327 / 1e-113 ATCBP20, CBP20 CAP-binding protein 20 (.1.2) AT3G10400 56 / 4e-09 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G66260 56 / 5e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G37720 54 / 3e-08 DIP2, ALY4 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) AT3G46020 50 / 5e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 51 / 6e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G59950 51 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein AT2G18510 52 / 2e-07 EMB2444 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G27330 49 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G37220 50 / 3e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G014600 [exp] 425 / 2e-152 AT5G44200 331 / 2e-115 CAP-binding protein 20 (.1.2) Potri.004G087000 [exp] 55 / 1e-08 AT5G37720 213 / 2e-68 interacting with DNA-binding domain of Zn-finger PARP 1, ALWAYS EARLY 4 (.1.2) Potri.009G160300 [exp] 52 / 1e-08 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 51 / 8e-08 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G028300 [exp] 52 / 1e-07 AT2G18510 453 / 4e-160 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G093944 [exp] 51 / 2e-07 AT5G59950 196 / 1e-62 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.005G125300 [exp] 51 / 3e-07 AT2G18510 412 / 3e-144 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G124200 [exp] 51 / 4e-07 AT1G49760 822 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Potri.014G025400 [exp] 50 / 5e-07 AT1G49760 789 / 0.0 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017682 [exp] 353 / 4e-124 AT5G44200 358 / 9e-126 CAP-binding protein 20 (.1.2) Lus10039887 [exp] 313 / 4e-108 AT5G44200 332 / 1e-115 CAP-binding protein 20 (.1.2) Lus10033636 [exp] 281 / 8e-96 AT5G44200 298 / 1e-102 CAP-binding protein 20 (.1.2) Lus10019838 [exp] 59 / 6e-10 AT1G49760 192 / 3e-55 poly(A) binding protein 8 (.1), poly(A) binding protein 8 (.2) Lus10002835 [exp] 57 / 4e-09 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10027886 [exp] 57 / 4e-09 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10024413 [exp] 55 / 1e-08 AT5G59950 219 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10025329 [exp] 55 / 1e-08 AT5G59950 224 / 2e-73 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041728 [exp] 53 / 9e-08 AT2G18510 436 / 1e-153 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10024024 [exp] 50 / 2e-07 AT2G18510 275 / 5e-92 embryo defective 2444, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.007G137400.2 pacid=42766249 polypeptide=Potri.007G137400.2.p locus=Potri.007G137400 ID=Potri.007G137400.2.v4.1 annot-version=v4.1 ATGGCTTCTCTCTTCAAGGATCTAACAAAGCTGTCAGCTTATAGAGACAGGAGGTTTCCTGGTAATCAAGAAGAGTTTGAACATGCACTTCAAACCGCAA CAACTGTCTACATTGGTAACATGTCTTTTTATACCACTGAAGAGCAAGTTTATGAGCTTTTCTCTCGAGCTGGAGAGATTAAGAAGATAATCATGGGTTT GGACAAGAATAGTAAAACCCCATGTGGATTTTGTTTTGTACTATATTACTCCAGAGAAGACACTGAAGATGCGGTGAAGTTTATAAGTGGAACCATTCTT GATGATCGTCCAATTCGTGTGGATTTTGATTGGGGTTTTCAGGAAGGAAGGCAATGGGGTCGTGGTCGAAGTGGTGGACAGGTGCGAGATGAATATCGGA CAGACTATGATCCTGGCAGAGGTGGTTATGGAAAATTAGTCCAGCGAGAGTTAGAAGTACAAAGACAGCTTGTAGATTATGGTGCTGGGTCGTTGGGTTC TTTCCCTGCGGTTATGCCGCCACCTCATTTTGGCAGGCGTGGTGGAGGCCAGAATTATGGTAGTTCCAATCGCCAGGGTAGAGATTACCTTCAGCGGAAG CGGAACAGAGAGGATGACCAACAACCACGCGAATCTTCAAAGAGAACCTCAGATCATGAATCCAGGAGGAACTTTGATCCTGACTCACGGCCGGAGAAGA ATCCACGATTTCGTGAAAGCACCAACTCTGATGATGAAGAGGAAGATGACAGACAGCAACGACCTTAA
AA sequence Show only first row Show all	>Potri.007G137400.2 pacid=42766249 polypeptide=Potri.007G137400.2.p locus=Potri.007G137400 ID=Potri.007G137400.2.v4.1 annot-version=v4.1 MASLFKDLTKLSAYRDRRFPGNQEEFEHALQTATTVYIGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNSKTPCGFCFVLYYSREDTEDAVKFISGTIL DDRPIRVDFDWGFQEGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQRELEVQRQLVDYGAGSLGSFPAVMPPPHFGRRGGGQNYGSSNRQGRDYLQRK RNREDDQQPRESSKRTSDHESRRNFDPDSRPEKNPRFRESTNSDDEEEDDRQQRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44200		ATCBP20, CBP20	CAP-binding protein 20 (.1.2)		Potri.007G137400 [exp]	0	1
AT1G08580			unknown protein		Potri.019G049300 [exp]	2.64	0.7959
AT1G16470		PAB1	proteasome subunit PAB1 (.1.2)		Potri.012G123550 [exp]	6.00	0.7218
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Potri.003G138300 [exp]	7.74	0.7458	SEH1.1
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.017G059000 [exp]	9.69	0.7535
AT1G45000			AAA-type ATPase family protein...		Potri.009G120500 [exp]	12.48	0.7293
AT3G18940			clast3-related (.1)		Potri.004G148500 [exp]	12.84	0.7165
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Potri.009G082100 [exp]	14.24	0.7273
AT2G14260		PIP	proline iminopeptidase (.1.2)		Potri.001G287700 [exp]	20.49	0.6753
AT3G20320		ABCI15, TGD2	ATP-binding cassette I15, trig...		Potri.007G131700 [exp]	25.15	0.7528
AT3G61113			Ubiquitin related modifier 1 (...		Potri.014G078200 [exp]	26.83	0.6989

Compare expression of checked genes

Potri.007G137400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.