Plant FIBer expression Database

Potri.007G137700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G20590 330 / 3e-109 Reticulon family protein (.1.2)
AT4G28430 307 / 4e-100 Reticulon family protein (.1)
AT5G58000 167 / 2e-46 Reticulon family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G014300
[exp]
591 / 0 AT4G28430 283 / 5e-91 Reticulon family protein (.1)
Potri.018G108200
[exp]
152 / 6e-40 AT5G58000 344 / 1e-110 Reticulon family protein (.1)
Potri.006G185700
[exp]
151 / 2e-39 AT5G58000 339 / 7e-109 Reticulon family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002173
[exp]
365 / 2e-124 AT2G20590 295 / 1e-97 Reticulon family protein (.1.2)
Lus10039890
[exp]
325 / 3e-108 AT2G20590 270 / 1e-87 Reticulon family protein (.1.2)
Lus10035829
[exp]
148 / 1e-38 AT5G58000 326 / 1e-105 Reticulon family protein (.1)
Lus10036611
[exp]
145 / 1e-37 AT5G58000 325 / 4e-105 Reticulon family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0484 Peroxisome PF02453 Reticulon Reticulon
Representative CDS sequence
>Potri.007G137700.1 pacid=42766269 polypeptide=Potri.007G137700.1.p locus=Potri.007G137700 ID=Potri.007G137700.1.v4.1 annot-version=v4.1
ATGGATACAACACCACCTTCTCATAGATCAAACTCAAACACTCAAGCAAAATCAGCCTCTCGTTTATCAAGAATCACATACTCTATCGACCCAGAATCAC
GGCCTCCTCAGCTATCTCTAGACCTTATCCCTTCATCACCGAAGGAAACCCCATCAACCCCATCTAGTCTTTCACTCAAGTCCTCAACCAATTTTCTCCC
TCTTCGAGAACTTCTCCTTCTCTCACCATCTCCTTCAAGAAAATCTAGAACTCGTCTCGCCGACCGGGATGAGATGCCAGAGGAGGGTGGTTTGGAGCAA
AATGGGTCTAGAAGGAGATGCAAAACTAGAGGATCTCAGACGGGTTCTTTAGGTTGTGCTTCACCGAGGAGTAATAGAAGGTTAAGGAGAAGATTGGAAG
TGGAGAGTAGGGAAGAGAGGGATTTGATTGGTTTGGTAGATGAGGTTGGCAAAGTGAGAAAAAGAAGACATAGCGGCCGGTCTAAGAAGGAGAAAGAGAA
GCTCTCTTTAGTCCATTCATTTCCTTCTTCCAATTCTACTACAAAAGTTGATGAAGGTGATGGAAGCAATTTGGATAGGATTGGAATGGTTGTTTATGAT
TTGATAATGTGGAAAGATGTGGCAAAATCAAGCCTTTGGTTTGGTCTTGGATGTCTGTGTTTCCTATCATCTTGCTTTGCTAAAGGGATGAACTTTAGCA
TTTTATCTGCTATTTCGCAACTGGGACTTCTGGTTCTGGGTGCATCTTTCTGCTCGAATTCGATATGCCAAAGAAACAATGTTGAAAAGACACGAAAATT
TAAGCTGACAGAAGAGGACGTTTTGAGAGTGGGTACATTGATACTCCCAGCTGCAAATCTTGCAATTTCAAAGACAAGAGAGCTTTTCTCAGGAGAACCA
TCCATGACCCTAAAAGTAATTCCATTCTTGCTTCTTGGTGCTGAGTATGGTCATCTTGTAACTTTGAGGAGGCTTTGTGCTATTGGGTTTTTCATCAGCT
TCACCATACCAAAACTATATGCTTGCTATTCCAGTCAGATAAAGCAGAAAGCTGAGCAAATGAAAAACCGAATGTTTGAAGCTTGGGGAGCTTGTTCTCA
CAAAAAGATTGTGGCAGCATCAGCAGTAACAGCTTTCTGGAATCTGTCAAGTGTCAAAACCCGTATTTTTACTGCATTTATATCTTTGGTGATACTACGA
TGCTTCCGGCAACATCTAATGCCAAAACAGGAAGATGGGGAGACACTTCCAACACAGGTAGAAGGGGAAGCAGAAAGAGAGCAAGAGAAACAACAGGCAT
TAGTGGTGGCAGAAGGGGGGGAAGCTGAAAGAGAGCAAGTGCAACAACAGGCATTAGTGGTGGCAGAAGGAGTGACCTCCCAGAAACAGTAG
AA sequence
>Potri.007G137700.1 pacid=42766269 polypeptide=Potri.007G137700.1.p locus=Potri.007G137700 ID=Potri.007G137700.1.v4.1 annot-version=v4.1
MDTTPPSHRSNSNTQAKSASRLSRITYSIDPESRPPQLSLDLIPSSPKETPSTPSSLSLKSSTNFLPLRELLLLSPSPSRKSRTRLADRDEMPEEGGLEQ
NGSRRRCKTRGSQTGSLGCASPRSNRRLRRRLEVESREERDLIGLVDEVGKVRKRRHSGRSKKEKEKLSLVHSFPSSNSTTKVDEGDGSNLDRIGMVVYD
LIMWKDVAKSSLWFGLGCLCFLSSCFAKGMNFSILSAISQLGLLVLGASFCSNSICQRNNVEKTRKFKLTEEDVLRVGTLILPAANLAISKTRELFSGEP
SMTLKVIPFLLLGAEYGHLVTLRRLCAIGFFISFTIPKLYACYSSQIKQKAEQMKNRMFEAWGACSHKKIVAASAVTAFWNLSSVKTRIFTAFISLVILR
CFRQHLMPKQEDGETLPTQVEGEAEREQEKQQALVVAEGGEAEREQVQQQALVVAEGVTSQKQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G20590 Reticulon family protein (.1.2... Potri.007G137700
[exp]
0 1
AT3G20060 UBC19 ubiquitin-conjugating enzyme19... Potri.001G254500
[exp]
2.23 0.9821 UBC19.2
AT3G15550 unknown protein Potri.001G175500
[exp]
4.00 0.9742
AT4G02800 unknown protein Potri.002G053100
[exp]
4.24 0.9778
AT5G04320 Shugoshin C terminus (.1.2) Potri.004G216000
[exp]
5.29 0.9743
AT5G15510 TPX2 (targeting protein for Xk... Potri.004G118700
[exp]
5.47 0.9764
AT5G04320 Shugoshin C terminus (.1.2) Potri.009G006100
[exp]
6.92 0.9747
AT4G28430 Reticulon family protein (.1) Potri.017G014300
[exp]
7.21 0.9717
AT4G33270 AtCDC20.1, CDC2... cell division cycle 20.1, Tran... Potri.013G048900
[exp]
8.48 0.9683 Pt-CDC20.4
Potri.006G190400
[exp]
8.66 0.9745
AT1G20070 unknown protein Potri.005G241800
[exp]
9.11 0.9397

Potri.007G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.