Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53970 504 / 1e-178 TAT7 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) AT2G20610 466 / 1e-162 RTY1, RTY, HLS3, ALF1, SUR1 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) AT5G36160 464 / 1e-162 Tyrosine transaminase family protein (.1) AT4G28420 446 / 4e-155 Tyrosine transaminase family protein (.1.2) AT4G28410 430 / 7e-149 Tyrosine transaminase family protein (.1) AT2G24850 398 / 3e-136 TAT3 tyrosine aminotransferase 3 (.1) AT4G23600 374 / 3e-127 JR2, CORI3, TAT1 JASMONIC ACID RESPONSIVE 2, CORONATINE INDUCED 1, Tyrosine transaminase family protein (.1.2.3) AT4G23590 364 / 3e-123 Tyrosine transaminase family protein (.1) AT1G77670 96 / 2e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G22250 86 / 4e-18 ATAAT, AAT, MEE17 MATERNAL EFFECT EMBRYO ARREST 17, aspartate aminotransferase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G137900 [exp] 624 / 0 AT5G53970 457 / 4e-160 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014100 [exp] 575 / 0 AT5G53970 528 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G014200 [exp] 567 / 0 AT5G36160 540 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G014000 [exp] 566 / 0 AT5G53970 520 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.017G013800 [exp] 560 / 0 AT5G36160 520 / 0.0 Tyrosine transaminase family protein (.1) Potri.017G013900 [exp] 557 / 0 AT5G53970 521 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.007G138002 [exp] 369 / 4e-129 AT5G53970 226 / 5e-73 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Potri.005G175400 [exp] 107 / 2e-25 AT1G77670 728 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.002G086000 [exp] 106 / 6e-25 AT1G77670 726 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033659 [exp] 534 / 0 AT5G36160 481 / 3e-169 Tyrosine transaminase family protein (.1) Lus10017703 [exp] 530 / 0 AT2G20610 486 / 1e-170 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10018626 [exp] 526 / 0 AT2G20610 517 / 0.0 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10039861 [exp] 523 / 0 AT2G20610 509 / 1e-179 SUPERROOT 1, ROOTY 1, ROOTY, HOOKLESS 3, ABERRANT LATERAL ROOT FORMATION 1, Tyrosine transaminase family protein (.1.2) Lus10033661 [exp] 523 / 0 AT5G36160 499 / 1e-176 Tyrosine transaminase family protein (.1) Lus10017705 [exp] 520 / 0 AT5G53970 507 / 1e-179 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017704 [exp] 512 / 0 AT5G53970 508 / 4e-180 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10017934 [exp] 506 / 2e-179 AT5G53970 619 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10013676 [exp] 486 / 9e-167 AT5G53970 617 / 0.0 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1) Lus10032654 [exp] 442 / 1e-154 AT5G53970 423 / 2e-147 tyrosine aminotransferase 7, Tyrosine transaminase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF01212 [poplar] [flax] Beta_elim_lyase Beta-eliminating lyase
Representative CDS sequence Show only first row Show all	>Potri.007G137950.1 pacid=42766093 polypeptide=Potri.007G137950.1.p locus=Potri.007G137950 ID=Potri.007G137950.1.v4.1 annot-version=v4.1 ATGGAGAGCAAATTAAGGAAATTGGGTTTCGAAGGCATCGGTAACCTCAAAACACCACCACCAAGTTACAGCATTAAGAGTGTTGTCAAATTTCTGAAAG AAAACATCAATGAAGATGATCACAGGCTTGCCATTTCACTTGGCGTGGGTGACCCCTCTGGTTTCAAGTGCTTCAGGACTACTAATATAGCTGAGGATGC CATAGTTGGAGCTGTCCGTTCTGCTAAATTCAATTCTTATGCTCCTACTGGTGGTATTTTATCTGCAAGAAGGGCTATTGCAGAATACCTCTCCAATGAT CTTCCTTACCAGTTATCACCGGAAGATGTCTATGTCACCCTTGGTTGCAAACATGCCATGGAAATGATAGTGAAAGTCCTTGCTAGACCAGAAGCCAATA TTCTGCTTCCAAGACCTGGTTTTAGAATTTATGAAACTTATGCAAATTCTCATCACCTAGAGTTAAGGCATTTTGATCTTCTTCCCCAGAAAGGCTGGGA GGTTGATCTAGATGCTGTTGAAGCTATTGCAGATGAGAACACCATTGCCATGGTTATAATAAATCCTGGAAATCCTTGTGGAAGTGTTTATTCATATGAA CATTTGAGTAAGATTGCGGAGACTGCAAGAAAGCTTGGGATTCTTGTTGTTGCTGATGAAGTATATGGTCATATCGTTTTTGGGAGCAAGCCATTTGTGC CCATGGGTGTTTTTGGATCAACTGTGCCTGTTATTACCCTTGGATCCATATCGAAAAGATGGATGGTTCCCGGTTGGCGACTTGGGTGGCTAGTAACAAG TGATCCTACTGGTTTGCTTCAGATATGTGGGATTGCTGATTCCATTAAAAGTGCTCTCAATCCCGCCCCTTTCTCGCCGACCTTTATTCAGGCCGCTGTT CCTGAAATCCTTGAGAAAACAACAGAGGAGTTCTTTTCAAGAACTATAAACATTCTTAGAGCAGCTTCAGCCTTCTGTTACGATAAACTGAAGGAGATAC CGTGCATTACTTGCCCACAAAGAGCAGAAGGAGCCATGTTTGTTTTGGTGAAGCTTAACCTTTCACTTCTTGAAGACATCGAAGATGACATGGAGTTCTG TCTGAAGCTAGCTAAAGAGGAATCTCTCGTCATTTTACCAGGGGTGACTGTGGGACTAAAGAATTGGCTCCGCATAACATTTTCAGTTGAACAATCATCT CTTGAAGATGGTCTTGGAAGGTTAAGGTCCTTCTGTGGGAGACATGCGAAGAAACCGTAG
AA sequence Show only first row Show all	>Potri.007G137950.1 pacid=42766093 polypeptide=Potri.007G137950.1.p locus=Potri.007G137950 ID=Potri.007G137950.1.v4.1 annot-version=v4.1 MESKLRKLGFEGIGNLKTPPPSYSIKSVVKFLKENINEDDHRLAISLGVGDPSGFKCFRTTNIAEDAIVGAVRSAKFNSYAPTGGILSARRAIAEYLSND LPYQLSPEDVYVTLGCKHAMEMIVKVLARPEANILLPRPGFRIYETYANSHHLELRHFDLLPQKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYE HLSKIAETARKLGILVVADEVYGHIVFGSKPFVPMGVFGSTVPVITLGSISKRWMVPGWRLGWLVTSDPTGLLQICGIADSIKSALNPAPFSPTFIQAAV PEILEKTTEEFFSRTINILRAASAFCYDKLKEIPCITCPQRAEGAMFVLVKLNLSLLEDIEDDMEFCLKLAKEESLVILPGVTVGLKNWLRITFSVEQSS LEDGLGRLRSFCGRHAKKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	0	1
AT5G05800			unknown protein		Potri.001G370432 [exp]	4.24	0.7525
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Potri.001G299300 [exp]	4.35	0.6672
AT1G53050			Protein kinase superfamily pro...		Potri.005G086900 [exp]	9.48	0.6983
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.004G055200 [exp]	14.83	0.6772	Pt-CYP79.1
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.007G084100 [exp]	17.23	0.6838
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Potri.019G061800 [exp]	20.49	0.6818
					Potri.018G077983 [exp]	20.90	0.6623
AT3G63230			Protein of unknown function (D...		Potri.002G050100 [exp]	31.81	0.6222
					Potri.007G046150 [exp]	32.83	0.5990
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023016 [exp]	36.66	0.6465

Compare expression of checked genes

Potri.007G137950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.