Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03780 672 / 0 AtTPX2, TPX2 targeting protein for XKLP2 (.1.2.3) AT4G22860 125 / 3e-30 Cell cycle regulated microtubule associated protein (.1.2) AT5G44270 109 / 5e-26 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G11990 104 / 3e-23 Cell cycle regulated microtubule associated protein (.1) AT3G01015 62 / 1e-09 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G15510 52 / 1e-06 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G62240 51 / 2e-06 Cell cycle regulated microtubule associated protein (.1) AT5G07170 50 / 3e-06 Cell cycle regulated microtubule associated protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013100 [exp] 1127 / 0 AT1G03780 667 / 0.0 targeting protein for XKLP2 (.1.2.3) Potri.003G117800 [exp] 139 / 2e-34 AT4G22860 377 / 8e-126 Cell cycle regulated microtubule associated protein (.1.2) Potri.001G114400 [exp] 118 / 1e-27 AT4G22860 353 / 4e-117 Cell cycle regulated microtubule associated protein (.1.2) Potri.017G092100 [exp] 65 / 1e-10 AT5G15510 403 / 5e-136 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.004G118700 [exp] 58 / 2e-08 AT5G15510 410 / 8e-139 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.012G130300 [exp] 56 / 7e-08 AT4G22860 164 / 2e-45 Cell cycle regulated microtubule associated protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033674 [exp] 719 / 0 AT1G03780 718 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10017715 [exp] 697 / 0 AT1G03780 687 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10018608 [exp] 691 / 0 AT1G03780 741 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10039844 [exp] 648 / 0 AT1G03780 689 / 0.0 targeting protein for XKLP2 (.1.2.3) Lus10006677 [exp] 114 / 5e-26 AT4G22860 345 / 5e-113 Cell cycle regulated microtubule associated protein (.1.2) Lus10007022 [exp] 66 / 5e-11 AT4G22860 209 / 3e-63 Cell cycle regulated microtubule associated protein (.1.2) Lus10030836 [exp] 58 / 2e-08 AT3G01015 413 / 8e-141 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10031690 [exp] 54 / 3e-07 AT4G22860 117 / 2e-29 Cell cycle regulated microtubule associated protein (.1.2) Lus10030650 [exp] 53 / 9e-07 AT5G15510 404 / 4e-137 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10029190 [exp] 46 / 0.0002 AT5G15510 365 / 2e-121 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain PF12214 [poplar] [flax] TPX2_importin Cell cycle regulated microtubule associated protein
Representative CDS sequence Show only first row Show all	>Potri.007G138600.3 pacid=42766030 polypeptide=Potri.007G138600.3.p locus=Potri.007G138600 ID=Potri.007G138600.3.v4.1 annot-version=v4.1 ATGGCAGCAGAGAGTGACGATTCTTCGACCGCTACCACTGCTACGACGACGACGTCGTTGACTGCTAATGCGACGACATCGTTGAAAGAGAATACGACGA CGACGTCGTTGACTGCTAATGCGACGACATCGTTGAAAGAGAATACGACGACGTTGATGTTAGTAGACGAGATGTATGAGTTTTCGGCTCCGAAGTTTTA TGATTTTGTGAAAGGAGAATCGGATGAAGATTCTAGAAACGCTGAGCTTTGGTTCGATGTTACAGCGGCCTATGCTCCTTCTCCTTTTATGCCTAGAATA AAGACTGGTAGATCATTTAAGGTAGAGACCTTATGTGATTTTAGTCAAGCAGACCAATTGCATAAGCCCATTGAAATTGAATTGCAGGTCGCAGAATCAT CTGATTCAAAACCAACTGACTCTTCATCAGACAGCAACTCTCAATCAGAGGTCATGCCACTACCGGAACCAGCGGCATCCTCTGAAATGAGGAAGGAAGA AACTAGTTCTAATGAGGAAAACAATGCTAACCTTATCAATGTGATTTCTGCTGGTGATGTTACTTGTGAAAAAGAGAAGAAGGTGGGGTTTGCATGTGCT GAAAGTAATGGAAGATGCACTTCTTCTCTGCAAATCGAGAACACTGATGGTAAGAGCAGTAAAAATGATGCTTACTGCACCCCTAAGCAACCAATGTCTT CTCGGAACAGAGGCATATTGACTGATTCCAAGAAGAATCAATCAGCTAGACATATAGCTAGTTTGGTTAAGAATCCATCGTCGGTGAAGCCAAAGGGTCA ATCACAGTCTTCACGAGTTAAGGGAATCAAACCAACAAGTGTCAAAAAAGATCCTAATGTGAAAAATGTTGCCGGGACTGCCAATTTAGCCCAAGAGAAC CAAGCAATTAAGAAACAGAAGCTGGATGGGGGGAGGTCCAGACAGATTGTTAATGCGAAGCCCCCACAACCATTGATGCACAAGTCCAAACTGGGTCTTA GCAGTGGCAATTCTAACTTTTGTTCATCTGTTCCAAATAAAATGCAGAAAGTGGATAGAAAGGTTTATGTTCGGGAACAAGCAGCTCCAGCTCCATTTGT TTCAATGGCAGAAATGATGAAGAAGTTCCAATCAAATACTAGAGAATTGTCATTGCCACATGATGGTCCTGCTTCTGTTATCCAGAGGAATCCTAAACTC ACACTGACAAGGCCTAAGGAGCCTGAATTTGAAACAGCTCAGCGTGTTCGCTCAGTCAAAATAAAAAGCACTGCAGAGATTGAAGAAGAGATGATGGCCA AAATTCCCAAGTTCAAAGCCAGACCACTGAACAAGAAGATTCTGGAAGCTCCAACATTACCAGCATTACCAAGAAGCACACCACACCGACCTGAGTTCCA GGAGTTTCATTTTGTGACAGCAGCGAGGGCAAATCAGAATGCAGAATCAGCTTCAGTGGCTTCAACGGAAGTGTCTTGTCAGAGTAATCAGTGGAAACCT CATCATCTCACAGAGCCCAAAACCCCTGTTCTTCATACATCTTTAAGGGCCCGTCCAGCAATGGTGAAAAGTTCTTTAGAACTAGAGAAAGAAGAGCTTG AAAAGATCCCTAAATTTAAGGCAAGGCCTTTGAATAGAAAGATATTTGAAAGTAAGGGAGAGATGGGGATTTTCTGTCATGTGAAGAAGCAAGTTACGAT CCCTCAAGAATTTCATTTTGCCACAAATGAGAGGATTCCACCGGCTTCTTCTGTTGTTGATATGTTTGAAAAGCTCTCACTGAGGTCAGAACCTACCAAT GAAAATCCCATTCCAAGAAACACACTGCCAAATCCATTCCACCTCCACACAGAGGAAAGAGGGGCCGAAAAAGAGAGGAAATTTGTGATGGAACTTATGC AGAAGCAGATGGAAGAGGAAAGAGCAAGATTTCATAGGGCCAATCCCTATCCTTATACCACTGATTATCCTGTGATTCCACCAAGACCAGAGCCCAAACC ATGCACAAAAGCAGAACCTTTCCAATTAGAGAGTCTAGTAAGGCATGAGGAGGAAATGCAGAGGGAAATGCAAGAAAGAGAGAGAAAGGAAAAGGAAGAA GCCCAGATGAGGATATTCAGAGCACAGCCCGTACTTAAAGAGGATCCAATTCCTCTACCAGAGAAAGTGCGAAAACCACTTACACAGGTTCAGCAATTCA ATCTCAATGCAGATCATAGGGCTGTGGACAGGGCAGAATTTGATCAAAAGGTGAAGGAGAAAGAAATGCTGTATAAGAGATATAGAGAAGGGAGTGAAAC TGCCAGGATGATGGAAGAAGAAAAGGCATTGAAACAGCTTAGAAGGACAATGGTTCCCCATGCCCGGCCGGTTCCAAATTTTAACCGGCCATTCTTCCCC GAGAAATCGTCCAAGGAAACTACAAATGCAAGGTCACCAAATCTACGGGTGCTCCAAAGAAGAGAAAGGAGGAAGATGATGGTGAATGCAGCTTCTTCTG CCACTGCTTCTGGCATGAGGTGA
AA sequence Show only first row Show all	>Potri.007G138600.3 pacid=42766030 polypeptide=Potri.007G138600.3.p locus=Potri.007G138600 ID=Potri.007G138600.3.v4.1 annot-version=v4.1 MAAESDDSSTATTATTTTSLTANATTSLKENTTTTSLTANATTSLKENTTTLMLVDEMYEFSAPKFYDFVKGESDEDSRNAELWFDVTAAYAPSPFMPRI KTGRSFKVETLCDFSQADQLHKPIEIELQVAESSDSKPTDSSSDSNSQSEVMPLPEPAASSEMRKEETSSNEENNANLINVISAGDVTCEKEKKVGFACA ESNGRCTSSLQIENTDGKSSKNDAYCTPKQPMSSRNRGILTDSKKNQSARHIASLVKNPSSVKPKGQSQSSRVKGIKPTSVKKDPNVKNVAGTANLAQEN QAIKKQKLDGGRSRQIVNAKPPQPLMHKSKLGLSSGNSNFCSSVPNKMQKVDRKVYVREQAAPAPFVSMAEMMKKFQSNTRELSLPHDGPASVIQRNPKL TLTRPKEPEFETAQRVRSVKIKSTAEIEEEMMAKIPKFKARPLNKKILEAPTLPALPRSTPHRPEFQEFHFVTAARANQNAESASVASTEVSCQSNQWKP HHLTEPKTPVLHTSLRARPAMVKSSLELEKEELEKIPKFKARPLNRKIFESKGEMGIFCHVKKQVTIPQEFHFATNERIPPASSVVDMFEKLSLRSEPTN ENPIPRNTLPNPFHLHTEERGAEKERKFVMELMQKQMEEERARFHRANPYPYTTDYPVIPPRPEPKPCTKAEPFQLESLVRHEEEMQREMQERERKEKEE AQMRIFRAQPVLKEDPIPLPEKVRKPLTQVQQFNLNADHRAVDRAEFDQKVKEKEMLYKRYREGSETARMMEEEKALKQLRRTMVPHARPVPNFNRPFFP EKSSKETTNARSPNLRVLQRRERRKMMVNAASSATASGMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	0	1
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	2.44	0.9283	CPE902,Pt-SMC2.2
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	2.64	0.9374
AT3G26050			TPX2 (targeting protein for Xk...		Potri.010G053200 [exp]	4.00	0.9243
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	5.00	0.9200	Pt-CPP1.22
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	5.47	0.9342
AT1G04030			unknown protein		Potri.013G047700 [exp]	5.47	0.9007
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.002G087600 [exp]	6.48	0.8788
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.001G147500 [exp]	8.83	0.8905
AT4G22860			Cell cycle regulated microtubu...		Potri.003G117800 [exp]	9.16	0.9148
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	10.95	0.9176

Compare expression of checked genes

Potri.007G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.