Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44280 312 / 2e-100 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) AT1G03770 172 / 7e-48 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT1G28327 58 / 4e-09 unknown protein AT4G21070 49 / 8e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT3G23060 47 / 4e-05 RING/U-box superfamily protein (.1) AT1G06770 45 / 8e-05 DRIP1 DREB2A-interacting protein 1 (.1.2) AT2G30580 44 / 0.0003 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT2G32950 43 / 0.0006 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1) AT2G34000 41 / 0.0006 RING/U-box superfamily protein (.1) AT1G18660 42 / 0.0008 zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2), zinc finger (C3HC4-type RING finger) family protein (.3), zinc finger (C3HC4-type RING finger) family protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G013000 [exp] 515 / 4e-180 AT5G44280 355 / 3e-117 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.011G056300 [exp] 326 / 8e-107 AT5G44280 324 / 7e-106 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G047000 [exp] 306 / 8e-99 AT5G44280 328 / 3e-107 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Potri.004G209600 [exp] 48 / 2e-06 AT4G38140 88 / 3e-23 RING/U-box superfamily protein (.1) Potri.010G077800 [exp] 50 / 4e-06 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.001G358100 [exp] 50 / 4e-06 AT4G21070 649 / 0.0 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Potri.008G161500 [exp] 49 / 9e-06 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 47 / 2e-05 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.005G054400 [exp] 46 / 5e-05 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018609 [exp] 293 / 2e-92 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 283 / 1e-88 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10022569 [exp] 45 / 3e-05 AT3G07200 81 / 3e-19 RING/U-box superfamily protein (.1.2) Lus10036151 [exp] 47 / 5e-05 AT4G21070 381 / 6e-118 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) Lus10039001 [exp] 45 / 0.0001 AT5G05130 1002 / 0.0 DNA/RNA helicase protein (.1) Lus10014749 [exp] 45 / 0.0002 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 44 / 0.0002 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10021993 [exp] 42 / 0.0007 AT2G30580 276 / 5e-89 DREB2A-interacting protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF00097 [poplar] [flax] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Potri.007G138700.1 pacid=42765513 polypeptide=Potri.007G138700.1.p locus=Potri.007G138700 ID=Potri.007G138700.1.v4.1 annot-version=v4.1 ATGCCTGCCCACGCCTCGGCTTCTTCACCGGACAACATTAATCCCGACAATGAACAACAACAAGGTGAAGAGCAAGAGCAAGAGCAAGAGCAAGAACATC ATCATCAACAGCAACGACAAGACTTGTCTGAGCTATCTCCTCCTCTACAAAACGGGCATCCAACTGACCAGGAACAGCAGCACCATCAAAATGGTCAGCA TCAAGAACTAGAAGAGGAGGAGGAGGAAGTAGACAAGAAAGAAGAAGCAGAAGTTCAAGAAGAAGAAGAAGAAGATTATGAAGTAAAGGAAGAGGAAGGA GAAGAGGAAGGGGGAGGAGGAGGAGGCGGAGGAGAAGGGAAAGAAGAATCTGATGGAACCCAGTCGTCTTCTTCTTCCAGTTCTGAAAATGAGGAAAAGC CCGAATTTGTCTTTGTGGAACTGCTGGACATTCGTAAAGATGTGCAGTGTCCAATATGTTTAGGGATCATAAAGAAAACACGAACTGTAATGGAATGCCT GCACCGTTTTTGCAGGGAATGCATTGATAAATCAATGCGAATGGGGAACAATGAATGCCCTGCTTGCCGCACACATTGTGCAAGTCGGCGATCCTTGAGA GATGATCCAAACTATGATGCCCTAATTGCAGCCTTATATCCAGACATTGATAAGTATGAGGAAGAGGAATTGGCTTTTCATGAAGAGGAAAGGACTCGGA ACAAGCAGATTCAAGCTTCAATCGCTCAAATAATTCAAAGACAGTCAGAAGCACTGGTTAAGAGACGCACGCTGGGTAAAGAATCAACTTTCATGACACG ATCACAGAGAACACATCGGCCTATTTCAAGGAGGCGACGGAACAGTCGAGGCAGTGATTTTCAAGGATATGAAGACATTGAGGATGAAAATGATGACAAT ATAGGCAAGGACTCGTCTTCCACTGATGACCGCTCTACAGAAGTTAGGCAGAGGAGGCGCAAGAGACAGCGGACCTCCCAGCCCTCTTCTTCAGCTGTGA ATTCAGAGGGTGGATGTGCTGAAAACGATTTAGATTCAAATAGAGAAAACAGGGGATTATCTCCAGGGCTTGTGTGGAACACAGAAATGCTTGCTTGGGG CAGGGGCGGTACTCGGAGTCATACAAGACATGGTAATCCTAGTGGTTGCAACAATAAGAATTCACGAAATACTCGCTTATCCAAGCTGGTAGAATATCTC AGGAGCTTAGATGAGAAAAATGATGAGTTGGATATTCATCTCAAGCTTATTACTTTGGACAAACACAGTGCACCAACTTTAAAGCAGCCCTACCTTTGCT GCCGGCCCAGTTTGTCAATCAAACACCTATGTGAATATGTTGCTCACCAAACAACTTTGCAAGCTGAAGAAGTTGAAATATTGTTAGTGAAGGGGAAGCA CCAGTCCGATGAAAATTTGCCCACCAAGCATCCTCAGATCCCTATGGATGAGCTGCAAATTTTGAAAGGACAAGAAACAGTGGCAGGCCTTAAAGCAAGC TGCTCTTCCAGCAGAGATCATTTGATACTAGCTTATCGGCAGAAGGAGATAATCAAAAGTTGA
AA sequence Show only first row Show all	>Potri.007G138700.1 pacid=42765513 polypeptide=Potri.007G138700.1.p locus=Potri.007G138700 ID=Potri.007G138700.1.v4.1 annot-version=v4.1 MPAHASASSPDNINPDNEQQQGEEQEQEQEQEHHHQQQRQDLSELSPPLQNGHPTDQEQQHHQNGQHQELEEEEEEVDKKEEAEVQEEEEEDYEVKEEEG EEEGGGGGGGGEGKEESDGTQSSSSSSSENEEKPEFVFVELLDIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRMGNNECPACRTHCASRRSLR DDPNYDALIAALYPDIDKYEEEELAFHEEERTRNKQIQASIAQIIQRQSEALVKRRTLGKESTFMTRSQRTHRPISRRRRNSRGSDFQGYEDIEDENDDN IGKDSSSTDDRSTEVRQRRRKRQRTSQPSSSAVNSEGGCAENDLDSNRENRGLSPGLVWNTEMLAWGRGGTRSHTRHGNPSGCNNKNSRNTRLSKLVEYL RSLDEKNDELDIHLKLITLDKHSAPTLKQPYLCCRPSLSIKHLCEYVAHQTTLQAEEVEILLVKGKHQSDENLPTKHPQIPMDELQILKGQETVAGLKAS CSSSRDHLILAYRQKEIIKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Potri.007G138700 [exp]	0	1
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	4.24	0.8388
AT2G29190		APUM2	pumilio 2 (.1.2)		Potri.001G243400 [exp]	5.65	0.8316
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.001G420400 [exp]	8.06	0.7803
AT5G05450			P-loop containing nucleoside t...		Potri.008G073100 [exp]	10.77	0.7519
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.002G028300 [exp]	10.95	0.8232
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.006G064200 [exp]	15.09	0.7437	Pt-CRCK3.1
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	17.83	0.7990
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	19.62	0.7847
AT3G57660		NRPA1	nuclear RNA polymerase A1 (.1)		Potri.006G055300 [exp]	21.67	0.8035
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Potri.009G158600 [exp]	24.33	0.7944

Compare expression of checked genes

Potri.007G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.