Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20635 679 / 0 ATP binding;protein kinases;protein serine/threonine kinases (.1) AT2G33560 82 / 1e-16 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT5G05510 81 / 5e-16 Mad3/BUB1 homology region 1 (.1) AT3G03940 56 / 8e-08 Protein kinase family protein (.1) AT5G18190 52 / 6e-07 Protein kinase family protein (.1) AT2G26980 52 / 8e-07 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT3G13670 50 / 3e-06 Protein kinase family protein (.1) AT2G25760 49 / 6e-06 Protein kinase family protein (.1.2) AT1G32320 45 / 6e-05 ATMKK10 MAP kinase kinase 10 (.1) AT3G14370 45 / 8e-05 WAG2 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185500 [exp] 88 / 4e-18 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.008G071900 [exp] 80 / 1e-15 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.005G258300 [exp] 79 / 1e-15 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 79 / 1e-15 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.019G034500 [exp] 56 / 8e-08 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 54 / 2e-07 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 54 / 2e-07 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 54 / 3e-07 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.006G236600 [exp] 52 / 7e-07 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033673 [exp] 638 / 0 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10017714 [exp] 617 / 0 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10040947 [exp] 89 / 2e-18 AT5G05510 388 / 2e-130 Mad3/BUB1 homology region 1 (.1) Lus10013199 [exp] 87 / 2e-18 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 87 / 4e-18 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10009836 [exp] 87 / 5e-18 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10014152 [exp] 60 / 4e-09 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 59 / 6e-09 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10025827 [exp] 57 / 2e-08 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10039203 [exp] 54 / 3e-07 AT3G13670 1132 / 0.0 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08311 [poplar] [flax] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Potri.007G139000.3 pacid=42766664 polypeptide=Potri.007G139000.3.p locus=Potri.007G139000 ID=Potri.007G139000.3.v4.1 annot-version=v4.1 ATGACCGTTATGTACACTGACCCGAGCGACAACGCTTCTTCTCTTCACGACCCTCTCCTTCCATGGCTACTGTCGATCAAAAAGGCACTTGATAGTAGCA TCTCCAGTTTGGAACTAAACAAGATTTTATTAGACTGTATTGGGACTTTCAAGCACAATCCACAGTATAAAAATGACCCCAGATTTCTCAAGATTTGGCT TCTCTATTTGGAAGGTAGTGATGACTTTGAAAATGTTTTCAAAGAAATGGAAGAGAATAATATATGCAGAGGCAATTCTTTGCTCTATGAACTGTACGCG GGGTTTCTTGAAGCAAAAGAGAATTGGAAGGAAGCATATATGGTTTATCAAACTGGCATTTTAAGGAAAGCAGAACCTCTTGAGAGGTTGGAACGTGCAA AAGTCTTATTTCTTGACAGATTGTCTTACAGGATAAATGCGTCTTCACTTCAAAAGACTGATTACAATGAATCCATGGAAATGGAAAAAGTTTGTGTTAA TCCATGGTCAGCCTCCACCACAAAAGAGTTGTTGGAGAGGATAAATCCTCAAATGATGAAATATGCTGGATACCATCCAAGTAAAAAAGCATACTCTGGA GACGTGGCTTTATCTACTCTACAGAATTCATCAAGGAATAAGATTGTTAAAATAGGTGGAAAGAAGTACGAGATCAAAGGTTGTCCTGTTAAAGGCGGGT TTGCTCAAGTATATAAAGCATATGTCAACAGTAATCCAGATGAAGTTGTTGCATTGAAGATACAAAGGCCTCCTTTTCCTTGGGAGTTCCATATGTACCG TCAACTTGATCAACGGATCCCAGACAATCAAAGTTCAAGCTTCGGATATGCTCATAGATTGCATCTGTTCTCTGATTATAGTATACTTGTCTGTGACTAT CTATCTCATGGGACGCTTCAGGATGTCATAAATTCTTATGTGGTCACTGGCAAGCCCATGGAAGAAGTGTTGTGTATCTATTACACCATAGAAATGCTAC ACATGCTGGAAACCCTGCATGGAGTTGGCATAATTCACGGGGACTTCAAGCCTGATAATCTGCTTATTCGCTATTCCAGGAGCAATCTTACAGAAGATGG GTTTAAAGAACGAAGTGGCCCTTGGAGAGATCAGGGTCTTTGCCTTGTTGACTGGGGGAGGGGGATAGACCTGCATCTCTTTCCTGATGATATAGAATTT GAGGGAGATTGTCGGACTTCTGGATTTCGTTGTGTTGAAATGCAAGAGAGGAAGCCCTGGACATTTCAGGTTGACACATATGGCCTCTGTGTTGTAATTC ATATGATGCTGCACCATTCTTACATGGAGATTGTAAAGAAAGGGACATCTGATGGAGGCTACATGTATCTGCCGAAGGCTCCTTTTAAAAGATACTGGAG TGATTTATGGAAGGATCTCTTCACAAAGCTGCTAAACAATAATAGCGGCAATGACTGTGAGTTGTTGAGGAACTTGAGAAAGAGCTTTGAGGATTACTTG CACTCTGATGATAAACTCCTAAGGAAACTGAAGGAGTTGCTGGCTAAGCAAAGACTCCTTTTGTGTTCTGCTTAG
AA sequence Show only first row Show all	>Potri.007G139000.3 pacid=42766664 polypeptide=Potri.007G139000.3.p locus=Potri.007G139000 ID=Potri.007G139000.3.v4.1 annot-version=v4.1 MTVMYTDPSDNASSLHDPLLPWLLSIKKALDSSISSLELNKILLDCIGTFKHNPQYKNDPRFLKIWLLYLEGSDDFENVFKEMEENNICRGNSLLYELYA GFLEAKENWKEAYMVYQTGILRKAEPLERLERAKVLFLDRLSYRINASSLQKTDYNESMEMEKVCVNPWSASTTKELLERINPQMMKYAGYHPSKKAYSG DVALSTLQNSSRNKIVKIGGKKYEIKGCPVKGGFAQVYKAYVNSNPDEVVALKIQRPPFPWEFHMYRQLDQRIPDNQSSSFGYAHRLHLFSDYSILVCDY LSHGTLQDVINSYVVTGKPMEEVLCIYYTIEMLHMLETLHGVGIIHGDFKPDNLLIRYSRSNLTEDGFKERSGPWRDQGLCLVDWGRGIDLHLFPDDIEF EGDCRTSGFRCVEMQERKPWTFQVDTYGLCVVIHMMLHHSYMEIVKKGTSDGGYMYLPKAPFKRYWSDLWKDLFTKLLNNNSGNDCELLRNLRKSFEDYL HSDDKLLRKLKELLAKQRLLLCSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20635			ATP binding;protein kinases;pr...		Potri.007G139000 [exp]	0	1
AT3G44050			P-loop containing nucleoside t...		Potri.009G156000 [exp]	2.00	0.9699
AT4G37110			Zinc-finger domain of monoamin...		Potri.012G044400 [exp]	4.00	0.9439
AT5G56120			unknown protein		Potri.001G470800 [exp]	5.29	0.9563
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.012G054400 [exp]	5.65	0.9602
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	6.00	0.9570
AT3G53320			unknown protein		Potri.016G085600 [exp]	6.00	0.9386
AT1G50240		FU	FUSED, Protein kinase family p...		Potri.019G052500 [exp]	6.92	0.9429
AT3G44050			P-loop containing nucleoside t...		Potri.004G193700 [exp]	8.06	0.9558
AT3G23670		PAKRP1L ,KINESI...	phragmoplast-associated kinesi...		Potri.002G235500 [exp]	10.95	0.9437	PAKRP1.2
AT3G27350			unknown protein		Potri.001G336300 [exp]	12.40	0.9488

Compare expression of checked genes

Potri.007G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.