Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28390 572 / 0 ATAAC3, AAC3 ADP/ATP carrier 3 (.1) AT5G13490 520 / 0 AAC2 ADP/ATP carrier 2 (.1.2) AT3G08580 502 / 7e-179 AAC1 ADP/ATP carrier 1 (.1.2) AT5G17400 350 / 2e-120 ER-ANT1 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) AT5G56450 196 / 9e-60 PM-ANT Mitochondrial substrate carrier family protein (.1) AT4G26180 111 / 8e-28 Mitochondrial substrate carrier family protein (.1) AT3G55640 111 / 1e-27 Mitochondrial substrate carrier family protein (.1) AT2G37890 108 / 2e-26 Mitochondrial substrate carrier family protein (.1) AT4G01100 105 / 3e-25 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 105 / 3e-25 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012800 [exp] 666 / 0 AT4G28390 575 / 0.0 ADP/ATP carrier 3 (.1) Potri.001G019400 [exp] 538 / 0 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.003G204600 [exp] 534 / 0 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.009G062200 [exp] 521 / 0 AT5G13490 625 / 0.0 ADP/ATP carrier 2 (.1.2) Potri.001G267800 [exp] 519 / 0 AT3G08580 592 / 0.0 ADP/ATP carrier 1 (.1.2) Potri.012G062500 [exp] 325 / 6e-110 AT5G17400 416 / 5e-147 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Potri.006G227100 [exp] 194 / 4e-59 AT5G56450 462 / 4e-165 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 107 / 2e-26 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 108 / 3e-26 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039847 [exp] 527 / 0 AT4G28390 545 / 0.0 ADP/ATP carrier 3 (.1) Lus10016418 [exp] 527 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019702 [exp] 525 / 0 AT5G13490 612 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10019701 [exp] 520 / 0 AT5G13490 607 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10016417 [exp] 518 / 0 AT5G13490 602 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031843 [exp] 501 / 8e-179 AT5G13490 580 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10031276 [exp] 501 / 1e-178 AT5G13490 582 / 0.0 ADP/ATP carrier 2 (.1.2) Lus10034658 [exp] 340 / 5e-116 AT5G17400 491 / 5e-177 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10017874 [exp] 329 / 5e-112 AT5G17400 473 / 5e-170 endoplasmic reticulum-adenine nucleotide transporter 1 (.1) Lus10018612 [exp] 277 / 4e-93 AT5G13490 301 / 1e-102 ADP/ATP carrier 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.007G139100.2 pacid=42765577 polypeptide=Potri.007G139100.2.p locus=Potri.007G139100 ID=Potri.007G139100.2.v4.1 annot-version=v4.1 ATGGCGGATGAATCGGGGAATCCGTTAGTTTTCAGGAAGATACATGGACAGTCATCTCTCATTTCTAAGCTTTCCCCAAACTTGCACAGCAGGAATTATC ACATGACTAGTGGTGCATTTTCTAATGGTTTTCATAGCCATATGCATCCTGCAATTCAGGGAACTGGTCTGGCATTTGTGCCACATGTTTCCCCGATATT TGTTGAAGCACCATCCGAGAAAGGCGCTAAAGGATTTATGATTGATTTTCTCATGGGAGGAGTATCAGCAGCTGTTTCAAAGACAGCAGCCGCTCCAATT GAGCGGGTTAAACTCTTGATTCAAAATCAAGATGAAATGATCAAGGCTGGTCGATTATCTGAACCTTACAAGGGTATCACTGACTGCTTTGCTAGAACCA TCAAAGATGAGGGTGTCCTTGCTCTTTGGAGAGGCAACACTGCTAATGTCATCAGATACTTCCCTACTCAGGCCCTGAACTTTGCATTCAAAGATTACTT CAAGAGTTTGTTTAACTTCAAGAAGGAAAAAGATGGCTACTGGAAGTGGTTTGCCGGGAATTTGGCATCAGGTGGAGCTGCTGGTGCTTCATCACTTCTA TTTGTTTACTCCTTGGATTATGCCCGTACTCGTTTGGCTAATGATTCAAAGGCAGCTAAAACGGGTGGTGAGAGGCAGTTTAATGGGTTGGTTGATGTTT ATAAGAAAACCCTCCAGTCTGATGGCATTGCTGGACTTTATCGTGGATTTAACATATCTTGTGTTGGAATTATTGTGTACCGTGGGCTCTACTTTGGAAT GTATGATTCTCTTAAACCTGTGGTTTTGGTTGGTAATTTGCAGGATAGTTTCTTTGCAAGTTTCTTGCTGGGATGGGGAATCACAATAGGTGCTGGATTG GCCTCTTACCCCATAGATACAGTCCGGAGAAGGATGATGATGACTTCAGGAGAAGCTGTGAAGTATAAGAGCTCTTTGGATGCATTTAAACAGATCGTCA AGAATGAAGGGGGTAAATCACTCTTCAAGGGTGCTGGTGCAAACATCCTACGTGCTGTGGCAGGTGCTGGTGTGCTTGCTGGGTATGACAAGCTGCAGGT CATTGTCTTTGGCAAGAAATATGGATCTGGTGGCGGTGGCTAA
AA sequence Show only first row Show all	>Potri.007G139100.2 pacid=42765577 polypeptide=Potri.007G139100.2.p locus=Potri.007G139100 ID=Potri.007G139100.2.v4.1 annot-version=v4.1 MADESGNPLVFRKIHGQSSLISKLSPNLHSRNYHMTSGAFSNGFHSHMHPAIQGTGLAFVPHVSPIFVEAPSEKGAKGFMIDFLMGGVSAAVSKTAAAPI ERVKLLIQNQDEMIKAGRLSEPYKGITDCFARTIKDEGVLALWRGNTANVIRYFPTQALNFAFKDYFKSLFNFKKEKDGYWKWFAGNLASGGAAGASSLL FVYSLDYARTRLANDSKAAKTGGERQFNGLVDVYKKTLQSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGNLQDSFFASFLLGWGITIGAGL ASYPIDTVRRRMMMTSGEAVKYKSSLDAFKQIVKNEGGKSLFKGAGANILRAVAGAGVLAGYDKLQVIVFGKKYGSGGGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28390		ATAAC3, AAC3	ADP/ATP carrier 3 (.1)		Potri.007G139100 [exp]	0	1
AT4G33865			Ribosomal protein S14p/S29e fa...		Potri.001G295902 [exp]	2.44	0.8502
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.015G057800 [exp]	9.00	0.8366
AT1G07790		HTB1	Histone superfamily protein (....		Potri.010G231300 [exp]	9.59	0.8386
AT3G44750		HDT1, HDA3, ATH...	HISTONE DEACETYLASE 2A, histon...		Potri.004G188800 [exp]	18.54	0.8259	HDT902,Pt-HD2.1
AT5G65360			Histone superfamily protein (....		Potri.002G028800 [exp]	20.32	0.8176
AT5G50375		CPI1	cyclopropyl isomerase (.1.2)		Potri.015G093500 [exp]	22.80	0.7791
AT4G18590			Nucleic acid-binding, OB-fold-...		Potri.010G239200 [exp]	23.68	0.8097
AT2G42110			unknown protein		Potri.016G045700 [exp]	23.95	0.8041
AT3G49010		RSU2, ATBBC1	40S RIBOSOMAL PROTEIN, breast ...		Potri.013G027600 [exp]	26.07	0.8249	ATBBC1.1
AT1G54690		HTA3 ,G-H2AX ,G...	histone H2A 3, GAMMA H2AX, gam...		Potri.005G040800 [exp]	26.07	0.7979

Compare expression of checked genes

Potri.007G139100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.