Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28380 502 / 4e-178 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 405 / 5e-133 Leucine-rich repeat (LRR) family protein (.1) AT3G24480 388 / 5e-132 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 392 / 1e-130 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 390 / 3e-128 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 382 / 8e-127 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 384 / 8e-126 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 381 / 1e-125 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT3G22800 365 / 3e-123 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 373 / 4e-122 LRX2 leucine-rich repeat/extensin 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083100 [exp] 398 / 1e-137 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 399 / 5e-135 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083000 [exp] 388 / 6e-133 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 394 / 8e-132 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 395 / 3e-130 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 383 / 1e-128 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 380 / 3e-128 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.006G081200 [exp] 386 / 1e-126 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.009G108100 [exp] 386 / 4e-124 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033672 [exp] 546 / 0 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 371 / 9e-127 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 374 / 6e-125 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 377 / 2e-124 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 367 / 2e-124 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10021001 [exp] 370 / 1e-122 AT3G19020 490 / 1e-165 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 367 / 3e-121 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 364 / 1e-119 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 349 / 3e-117 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 352 / 1e-116 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.007G139200.1 pacid=42766511 polypeptide=Potri.007G139200.1.p locus=Potri.007G139200 ID=Potri.007G139200.1.v4.1 annot-version=v4.1 ATGGCTTCGTCTCTGCTTTGTTCTATCACAATTCGTTCTTTACTTGTCTTGCTCTTACACCTATCTTCCTTGTCTAACTATCTAGCTGCAAAGCATAACC AACATGGCTATCACCGCCACCGCTCACACAACCATTCTCCAACTTCAAACCAAAGGCTCCACCAAGCTTATATTGCCCTCCAGGCATGGAGAAGGGTTAT CTACTCTGATCCAAACAACTTCACTACCAATTGGGTTGGTCCTGATGTATGTAGCTATAAAGGAATATACTGTGCAACTGCTACTGATGATCCCAAAATT AGAGTTGTCGCAGGCATTGACCTCAACTTTGCTGATATAGCAGGTTTCCTTCCCAATGAATTAGGCCTCCTCTCTGACTTAGCACTCATCCATTTGAATA GCAACAGACTTTGTGGGATTATCCCACAATCTCTAACCAACCTTTCACTTCTATATGAGCTTGATGTCAGCAACAACAGATTTGTAGGCCCTTTCCCTTC TGTTGTGCTCTCTCTTCCTATGCTAACCTATCTTGACCTTCGCTACAATGAGTTTGAAGGGCCATTACCTCCTCAGCTTTTCCAGAAAAAGATTGATGCG ATATTCATTAATAACAATCGATTTACTAGTGCAGTTCCCGCTTTCTTAGGTGGAACTTCAGCTTCTGTGGTGGTCATCGCCAACAATAACTTCAAAGGCT GCCTGCCGCCGAGTATAGCCAACTTGGCAGATACTTTAGAAGAGTTGCTGCTTATCAACACAAGCTTGACAGGTTGTTTGCCACCAGAAGTTGGGTATCT CTACAAACTGAGGGTGTTGGATGTAAGCCATAACAAGATAGTTGGTCCTATACCTTATAGCCTATCAGGATTAGCTCATTTGGAGCAGCTAAATTTAGCA CACAATCTGATGACCGGGATTGTACCTCAGGGAGTTTGTATACTGCCAAATTTAGCTAATTTTACTTTCTCTTACAACTTCTTTTGTGAGGAAGAGGGAA TTTGCATGAATCTTACATCTAAAGGCATCAAGTATGACGACCGCCGCAATTGTTTGCCAGAGAAGCCACTCCAGAGAAGTCAGAAAGAATGCAACGATAC ACTCGAGCATCCAGTCGACTGCTTTCAGGAATGCTGCATTGCCAGTGAAGGAGGCGGTGCTTTTGGTAGGGCAACTCCTTTCGCTCCTGCACTTGTGCCT GCTGCAACCCCTCTGCTGTCACCTTTTCTTGCTCCTAGCTTCCCATAA
AA sequence Show only first row Show all	>Potri.007G139200.1 pacid=42766511 polypeptide=Potri.007G139200.1.p locus=Potri.007G139200 ID=Potri.007G139200.1.v4.1 annot-version=v4.1 MASSLLCSITIRSLLVLLLHLSSLSNYLAAKHNQHGYHRHRSHNHSPTSNQRLHQAYIALQAWRRVIYSDPNNFTTNWVGPDVCSYKGIYCATATDDPKI RVVAGIDLNFADIAGFLPNELGLLSDLALIHLNSNRLCGIIPQSLTNLSLLYELDVSNNRFVGPFPSVVLSLPMLTYLDLRYNEFEGPLPPQLFQKKIDA IFINNNRFTSAVPAFLGGTSASVVVIANNNFKGCLPPSIANLADTLEELLLINTSLTGCLPPEVGYLYKLRVLDVSHNKIVGPIPYSLSGLAHLEQLNLA HNLMTGIVPQGVCILPNLANFTFSYNFFCEEEGICMNLTSKGIKYDDRRNCLPEKPLQRSQKECNDTLEHPVDCFQECCIASEGGGAFGRATPFAPALVP AATPLLSPFLAPSFP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G28380			Leucine-rich repeat (LRR) fami...		Potri.007G139200 [exp]	0	1
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.004G007600 [exp]	3.16	0.9104
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Potri.002G189200 [exp]	4.69	0.8975
					Potri.005G211000 [exp]	10.95	0.8573
AT3G52480			unknown protein		Potri.016G071700 [exp]	12.00	0.8090
AT2G37750			unknown protein		Potri.016G101900 [exp]	12.96	0.8188
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	14.24	0.8584
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Potri.016G018600 [exp]	15.09	0.8067
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Potri.009G006500 [exp]	15.19	0.8327
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.007G016400 [exp]	15.65	0.8758	CAld5H/F5H4,Pt-FAH1.4
					Potri.010G169350 [exp]	18.33	0.8046

Compare expression of checked genes

Potri.007G139200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.