Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20650 867 / 0 RING/U-box superfamily protein (.1.2) AT4G28370 865 / 0 RING/U-box superfamily protein (.1) AT2G01150 49 / 7e-07 RHA2B RING-H2 finger protein 2B (.1) AT1G53010 50 / 8e-07 RING/U-box superfamily protein (.1) AT4G12190 46 / 1e-06 RING/U-box superfamily protein (.1) AT2G17450 49 / 2e-06 RHA3A RING-H2 finger A3A (.1) AT2G35420 49 / 5e-06 RING/U-box superfamily protein (.1) AT2G44578 47 / 5e-06 RING/U-box superfamily protein (.1) AT2G44581 46 / 1e-05 RING/U-box superfamily protein (.1) AT1G74620 47 / 2e-05 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G012600 [exp] 1018 / 0 AT2G20650 893 / 0.0 RING/U-box superfamily protein (.1.2) Potri.001G400600 [exp] 61 / 9e-11 AT2G20650 59 / 8e-11 RING/U-box superfamily protein (.1.2) Potri.004G122000 [exp] 53 / 3e-08 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.011G119900 [exp] 52 / 7e-08 AT1G14200 60 / 9e-12 RING/U-box superfamily protein (.1) Potri.005G062400 [exp] 49 / 2e-06 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 49 / 2e-06 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.007G107000 [exp] 49 / 3e-06 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G245801 [exp] 48 / 3e-06 AT2G27940 61 / 1e-11 RING/U-box superfamily protein (.1) Potri.008G058100 [exp] 50 / 4e-06 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039848 [exp] 886 / 0 AT2G20650 846 / 0.0 RING/U-box superfamily protein (.1.2) Lus10018613 [exp] 855 / 0 AT2G20650 815 / 0.0 RING/U-box superfamily protein (.1.2) Lus10024629 [exp] 53 / 6e-08 AT5G05530 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10032265 [exp] 50 / 4e-07 AT3G19950 54 / 2e-09 RING/U-box superfamily protein (.1) Lus10040783 [exp] 49 / 5e-06 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10012819 [exp] 47 / 2e-05 AT1G26800 182 / 6e-58 RING/U-box superfamily protein (.1) Lus10006787 [exp] 46 / 2e-05 AT1G49230 159 / 9e-49 RING/U-box superfamily protein (.1) Lus10013397 [exp] 47 / 3e-05 AT5G56340 330 / 5e-111 RING/U-box superfamily protein (.1) Lus10020258 [exp] 47 / 5e-05 AT1G19800 469 / 4e-161 ATP-binding cassette I14, trigalactosyldiacylglycerol 1 (.1.2.3) Lus10027023 [exp] 45 / 5e-05 AT5G47610 89 / 1e-22 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.007G139300.1 pacid=42765981 polypeptide=Potri.007G139300.1.p locus=Potri.007G139300 ID=Potri.007G139300.1.v4.1 annot-version=v4.1 ATGGTTTTTGGGTATTTTGATATGGTTAATTTAGAGGGTTTTTTATGGAGGAGAGGGTTAGGTACTGTGGGTTGGATTTTTTGGTTATGGTTTGTGCTCT TGGGTTTGTTACAGGCAGTGGTGGGCTTAAGGCCATTGAGAGAGCGTGCACAGTCGTGGAGCGATGAGTGGCTATTTATTAGAAAAGATGAAAATGATTT GGGCCCATTTTCCATGTGGAACATAACGGGAACTTACCGAGGGTCTTGGAAATTTCTTGATTCTGCAAATAGCTCTTCCATGTTCCCAGATTTCAGGAAA TCCAATGGTGATTCTGTCATTGAATTAGTCAGCACACCAACAAAGATAAATGGTGTGCATTATGTCCAGGGTGTAATAATTTTCCATGACGTGTTTGACA ACAAACACAATGCTGGTGGTGCTCAAATAAGGGTAGAAGGTGTATATATATGGCCTTTTAGACAACTTCGAATGGTAGCTAACAGTGGTAAAGAGGGAGA ATTCAGCCAAGAAGAAGATTATATGTTATCTAATCCATATCATTTGCTTGGAGTATTTTCATCTCAGGTGTTCTTAGATTCTCCTCAAAATAAAATATGG AGAAGGAAAAATTGGCCAATTTATGAGATGGAGAAGCATTGTAATATTGAAATTGCCGCCCAAATTACACGCTTGTCATCTGTCCAAAGTGATGGAGACT GTGATCGTTTCCATATTGAAGGATTAATGGAGAGTCCTGCTGCAGACGATGAAGGGGATTGCTTCTCACCTTTACTACTAAATGCTACTTCTGTCAACAT TGAAGTCTACTATAACAAAGCAGTGAACTATACCTTGATGGTCACCTTTGTCTCATTCCTTCAAGTTCTTTTGCTGATTCGGCAAATGGAACATAGTAAC ACTCAATCAGGGGCTGCCAAAGTTTCAATTTTAATGATTGGGCAGCAAGCCATCATGGATGCTTATCTTTGTCTTCTACACCTAACTGCAGGAATACTAG TTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTCTTCTCAATTTTTGAGATGAGATATCTTCTTTCTATATGGAAGGCAGG CAGGCCTATGAATAGTGGTGAAGGTTGGGAGACAATGAGGCGTGAACTATCAGTTCTATATAGTCGTTTCTATGGGATCCTGTTGGGAGGCATTCTAGTT ATGTATGAGTTCCATAATTATCTTCGATCCATTCTTTTCTTAATGTACTCTTTTTGGATACCTCAAATATTCACCAATGTCATTCGTGACTCGAGAAAAC CTTTGCATCCCCATTACATCTTAGGCATGACTGTTACTCGTCTAGCAATCCCATTGTATATATTTGGATGCCCTAACAACTTTATGAGGACTGAGCCTGA CAAGACATGGTGTTTATATTTGGGTGTATTCGTTGGACTGCAAGCGTCAATTCTTCTTCTTCAACACTATCTTGGGTCTCGATGGTTCATTCCTCGCCAG ATCCTACCTGAGAAATATTTCTACTATAGAAGGTTTGATCAGGAATCGAATCACACCACAGACTGTGTCATTTGCATGACTGCAATTGACCTCACGCGGC ATTCTAATGATTGCATGGTAACTCCATGTGATCATTTCTTTCATTCCGGTTGTCTACAAAGGTGGATGGATATCAAGATGGAATGCCCAACTTGCCGGCG TCCACTACCACCAGCATAG
AA sequence Show only first row Show all	>Potri.007G139300.1 pacid=42765981 polypeptide=Potri.007G139300.1.p locus=Potri.007G139300 ID=Potri.007G139300.1.v4.1 annot-version=v4.1 MVFGYFDMVNLEGFLWRRGLGTVGWIFWLWFVLLGLLQAVVGLRPLRERAQSWSDEWLFIRKDENDLGPFSMWNITGTYRGSWKFLDSANSSSMFPDFRK SNGDSVIELVSTPTKINGVHYVQGVIIFHDVFDNKHNAGGAQIRVEGVYIWPFRQLRMVANSGKEGEFSQEEDYMLSNPYHLLGVFSSQVFLDSPQNKIW RRKNWPIYEMEKHCNIEIAAQITRLSSVQSDGDCDRFHIEGLMESPAADDEGDCFSPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSN TQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLSIWKAGRPMNSGEGWETMRRELSVLYSRFYGILLGGILV MYEFHNYLRSILFLMYSFWIPQIFTNVIRDSRKPLHPHYILGMTVTRLAIPLYIFGCPNNFMRTEPDKTWCLYLGVFVGLQASILLLQHYLGSRWFIPRQ ILPEKYFYYRRFDQESNHTTDCVICMTAIDLTRHSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20650			RING/U-box superfamily protein...		Potri.007G139300 [exp]	0	1
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.010G148500 [exp]	1.41	0.9027
					Potri.018G139200 [exp]	6.32	0.8722
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.006G062200 [exp]	6.92	0.8715
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	9.21	0.8276
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G097000 [exp]	9.53	0.8384	Pt-LAC2.2
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	10.77	0.8127	CLE12.1
AT5G19080			RING/U-box superfamily protein...		Potri.008G202700 [exp]	12.00	0.8059
AT2G40120			Protein kinase superfamily pro...		Potri.008G069000 [exp]	13.26	0.8701
AT1G79620			Leucine-rich repeat protein ki...		Potri.016G144100 [exp]	15.29	0.8352
AT1G76620			Protein of unknown function, D...		Potri.002G001900 [exp]	15.49	0.8037

Compare expression of checked genes

Potri.007G139300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.