Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49190 59 / 4e-10 O-acyltransferase (WSD1-like) family protein (.1) AT5G12420 56 / 7e-09 O-acyltransferase (WSD1-like) family protein (.1) AT5G16350 55 / 1e-08 O-acyltransferase (WSD1-like) family protein (.1) AT3G49210 51 / 3e-07 O-acyltransferase (WSD1-like) family protein (.1) AT3G49200 48 / 2e-06 O-acyltransferase (WSD1-like) family protein (.1) AT5G53380 47 / 6e-06 O-acyltransferase (WSD1-like) family protein (.1) AT5G22490 44 / 4e-05 O-acyltransferase (WSD1-like) family protein (.1) AT1G72110 42 / 0.0003 O-acyltransferase (WSD1-like) family protein (.1), O-acyltransferase (WSD1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010300 [exp] 279 / 1e-92 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.007G139600 [exp] 268 / 2e-88 AT3G49190 197 / 4e-57 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010500 [exp] 221 / 8e-70 AT3G49190 216 / 2e-64 O-acyltransferase (WSD1-like) family protein (.1) Potri.013G085101 [exp] 217 / 2e-68 AT3G49190 182 / 2e-51 O-acyltransferase (WSD1-like) family protein (.1) Potri.017G010700 [exp] 207 / 1e-64 AT3G49190 196 / 1e-56 O-acyltransferase (WSD1-like) family protein (.1) Potri.001G304600 [exp] 68 / 3e-13 AT3G49200 263 / 4e-82 O-acyltransferase (WSD1-like) family protein (.1) Potri.012G014200 [exp] 62 / 6e-11 AT5G53390 559 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Potri.019G070900 [exp] 44 / 6e-05 AT5G53390 446 / 2e-153 O-acyltransferase (WSD1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033680 [exp] 193 / 5e-59 AT3G49210 175 / 9e-49 O-acyltransferase (WSD1-like) family protein (.1) Lus10017721 [exp] 187 / 1e-56 AT3G49210 170 / 5e-47 O-acyltransferase (WSD1-like) family protein (.1) Lus10017718 [exp] 170 / 5e-50 AT3G49190 187 / 4e-53 O-acyltransferase (WSD1-like) family protein (.1) Lus10017717 [exp] 170 / 6e-50 AT3G49190 156 / 1e-41 O-acyltransferase (WSD1-like) family protein (.1) Lus10033678 [exp] 166 / 1e-48 AT3G49190 166 / 2e-45 O-acyltransferase (WSD1-like) family protein (.1) Lus10039843 [exp] 141 / 2e-39 AT5G53390 149 / 7e-40 O-acyltransferase (WSD1-like) family protein (.1) Lus10004008 [exp] 67 / 8e-13 AT5G53390 475 / 2e-164 O-acyltransferase (WSD1-like) family protein (.1) Lus10027887 [exp] 57 / 2e-09 AT5G53390 262 / 5e-82 O-acyltransferase (WSD1-like) family protein (.1) Lus10009718 [exp] 52 / 2e-07 AT3G49200 532 / 0.0 O-acyltransferase (WSD1-like) family protein (.1) Lus10030257 [exp] 46 / 8e-06 AT5G53390 202 / 2e-61 O-acyltransferase (WSD1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06974 [poplar] [flax] WS_DGAT_C WS/DGAT C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.007G139501.1 pacid=42765564 polypeptide=Potri.007G139501.1.p locus=Potri.007G139501 ID=Potri.007G139501.1.v4.1 annot-version=v4.1 ATGTGCAGGACTGTGCATAAATTTTTCTCTACAGTTTACAACACCGCATCAGATTTTTCTTCGAGCATTATAAAGAGTTGTTTGATTGAGGATGACAAAA CACCAATCCGATCTGGGCAACATGGAGTGGAGTTTCTGCCTGCTGGCATAGAAACAATGACTTTCTCTCTCGATCATATTAAGCAGATCAAGAGCAAGCT TGGAGTGACACTAAATGATGTGATTAGCGGGACAATATTCCTGGGGACAAGATTATACATGGAAACATTGAGCCCAGGATCAATCAATGCAAACTCTACA TCATTGGTGTTGCTAAACACGAGGATGTTTGTAGGCAGCTACAAGTCAATCGAAGAAATGGTGGAACCCAATGCTGACTCGCCATGGGGCAACCATTTTG CGTTCTTGAATATACCTGTTCCCAAGTTAAGGGATGCAGCTGGGGCTGAAAACCCTCTCCAGTTTGTATTCAAAGCAAGACAAATCATAAGGAGGAAGAG GATGAGCTCTTTTGCTGTTTACCTCACCGCAAAGTACCTTCAACTTGTTAGCAAGTTTAGAGGTGCGCGCGAAGAGAAGGACTTCATCGATCCCCGGAAG CTCAAGTCACACATAGAACATGCATTTGACATGATTTTCAAAGCTGCATGCAGTCGCAGGACTTCTCCACCGGCAAATTAA
AA sequence Show only first row Show all	>Potri.007G139501.1 pacid=42765564 polypeptide=Potri.007G139501.1.p locus=Potri.007G139501 ID=Potri.007G139501.1.v4.1 annot-version=v4.1 MCRTVHKFFSTVYNTASDFSSSIIKSCLIEDDKTPIRSGQHGVEFLPAGIETMTFSLDHIKQIKSKLGVTLNDVISGTIFLGTRLYMETLSPGSINANST SLVLLNTRMFVGSYKSIEEMVEPNADSPWGNHFAFLNIPVPKLRDAAGAENPLQFVFKARQIIRRKRMSSFAVYLTAKYLQLVSKFRGAREEKDFIDPRK LKSHIEHAFDMIFKAACSRRTSPPAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.007G139501 [exp]	0	1
AT4G25830			Uncharacterised protein family...		Potri.018G094500 [exp]	1.41	0.9726
AT5G62360			Plant invertase/pectin methyle...		Potri.015G128200 [exp]	2.23	0.9802
AT4G34530	bHLH	bHLH063, CIB1	cryptochrome-interacting basic...		Potri.005G121850 [exp]	6.00	0.9591
AT2G14830			Regulator of Vps4 activity in ...		Potri.011G122800 [exp]	9.48	0.9532
					Potri.004G050700 [exp]	10.48	0.9399
AT2G20875		EPF1	epidermal patterning factor 1 ...		Potri.011G123000 [exp]	10.48	0.9072
AT1G52827		ATCDT1	cadmium tolerance 1 (.1)		Potri.001G177333 [exp]	12.24	0.9565
					Potri.004G050600 [exp]	12.84	0.9496
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	16.73	0.9561
AT1G30700			FAD-binding Berberine family p...		Potri.001G462400 [exp]	16.97	0.9610

Compare expression of checked genes

Potri.007G139501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.