Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MPK6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43790 683 / 0 ATMAPK6, MAPK6, ATMPK6 MAP kinase 6 (.1) AT3G45640 592 / 0 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1) AT3G59790 577 / 0 ATMPK10 MAP kinase 10 (.1) AT4G01370 570 / 0 ATMPK4 MAP kinase 4 (.1) AT4G11330 551 / 0 ATMPK5 MAP kinase 5 (.1) AT1G07880 546 / 0 ATMPK13 Protein kinase superfamily protein (.1.2) AT1G01560 540 / 0 ATMPK11 MAP kinase 11 (.1.2) AT2G46070 526 / 0 MAPK12, ATMPK12 mitogen-activated protein kinase 12 (.1.2) AT1G10210 425 / 1e-148 ATMPK1 mitogen-activated protein kinase 1 (.1.2) AT2G18170 421 / 4e-147 ATMPK7 MAP kinase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G010200 [exp] 751 / 0 AT2G43790 677 / 0.0 MAP kinase 6 (.1) Potri.009G066100 [exp] 620 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.001G271700 [exp] 603 / 0 AT3G45640 640 / 0.0 mitogen-activated protein kinase 3 (.1) Potri.003G131800 [exp] 580 / 0 AT4G01370 656 / 0.0 MAP kinase 4 (.1) Potri.001G099900 [exp] 571 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Potri.002G162500 [exp] 568 / 0 AT4G01370 684 / 0.0 MAP kinase 4 (.1) Potri.014G088500 [exp] 565 / 0 AT4G01370 676 / 0.0 MAP kinase 4 (.1) Potri.005G231100 [exp] 442 / 7e-155 AT1G59580 617 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2) Potri.002G032100 [exp] 431 / 1e-150 AT1G59580 624 / 0.0 mitogen-activated protein kinase homolog 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008339 [exp] 730 / 0 AT2G43790 691 / 0.0 MAP kinase 6 (.1) Lus10027091 [exp] 728 / 0 AT2G43790 692 / 0.0 MAP kinase 6 (.1) Lus10036136 [exp] 610 / 0 AT3G45640 654 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10018127 [exp] 604 / 0 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10024668 [exp] 577 / 0 AT4G01370 657 / 0.0 MAP kinase 4 (.1) Lus10007921 [exp] 575 / 0 AT4G01370 689 / 0.0 MAP kinase 4 (.1) Lus10017518 [exp] 572 / 0 AT4G01370 632 / 0.0 MAP kinase 4 (.1) Lus10028765 [exp] 568 / 0 AT4G01370 630 / 0.0 MAP kinase 4 (.1) Lus10036384 [exp] 563 / 0 AT4G01370 681 / 0.0 MAP kinase 4 (.1) Lus10023339 [exp] 538 / 0 AT3G45640 565 / 0.0 mitogen-activated protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G139800.1 pacid=42764955 polypeptide=Potri.007G139800.1.p locus=Potri.007G139800 ID=Potri.007G139800.1.v4.1 annot-version=v4.1 ATGGACGGTGGAGGTACGGCGGATACAGAGATGTCGGATGCCCCGGAACAAGAGCAGGCTCCACCACAACCTATGGGAGGAGGAGGAGGAGGAGGAGGTG GAGGGATGGAGAATATACCGGCAACGTTGAGTCATGGAGGGAGGTTTATACAATATAATATATTTGGAAATATATTTGAAGTTACTGCTAAGTATAAACC TCCTATTATGCCTATTGGTAAAGGGGCTTATGGCATCGTCTGTTCGGCTTTGAATTCTGAGACAAATGAGCATGTGGCAATAAAGAAGATAGCAAATGCG TTTGATAATAAGATTGATGCAAAGAGGACACTTCGCGAGATCAAGTTGCTTCGCCACATGGATCATGAAAATGTTGTGGCAATCAGGGATATAATTCCTC CACCGCAGAGGGAATCGTTTAATGATGTTTATATTGCATATGAGCTAATGGACACTGACCTGCATCAGATCATTCGCTCCAATCAAGTATTATCAGAAGA GCACTGTCAGTATTTCCTGTATCAGATACTCCGTGGATTGAAATATATACATTCTGCAAACGTCCTGCATAGAGATTTAAAACCTAGCAATCTCCTCCTG AATGCTAATTGTGACTTGAAGATATGTGATTTTGGTCTGGCTCGTGTCACCTCGGAAACTGATTTCATGACAGAATATGTTGTTACAAGATGGTATCGAG CACCAGAGCTGCTCTTGAACTCCTCAGATTACACTGCAGCTATTGATGTGTGGTCAGTGGGTTGTGTGTTCATGGAGCTGATGGATCGAAAGCCCCTATT TCCTGGCCGAGATCATGTGCATCAGCTTCGTTTGCTTATGGAGCTGATTGGCACCCCATCAGAGGCTGAGTTGGGTTTTTTGAATGAAAATGCAAAGAGA TACATTCGGCAACTGCCACTTCATCGCCGTCAGTCATTCACTGAAAAGTTCCCAACTGTCCACCCGGCAGCTATTGATCTTATTGAAAAGATGTTAACTT TTGATCCCAGACAGAGAATTACTGTTGAGGAAGCACTTGCTCATCCATACCTAACATCGCTTCACGACATCAGTGATGAACCAATCTGCATGACCCCCTT CAGCTTTGACTTTGAGCAGCATGCACTGACTGAAGAACAGATGAAGGAACTTATTTATCGGGAAGCTCTTGCATTCAACCCTGAATACCAGAACTAG
AA sequence Show only first row Show all	>Potri.007G139800.1 pacid=42764955 polypeptide=Potri.007G139800.1.p locus=Potri.007G139800 ID=Potri.007G139800.1.v4.1 annot-version=v4.1 MDGGGTADTEMSDAPEQEQAPPQPMGGGGGGGGGGMENIPATLSHGGRFIQYNIFGNIFEVTAKYKPPIMPIGKGAYGIVCSALNSETNEHVAIKKIANA FDNKIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQRESFNDVYIAYELMDTDLHQIIRSNQVLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLL NANCDLKICDFGLARVTSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCVFMELMDRKPLFPGRDHVHQLRLLMELIGTPSEAELGFLNENAKR YIRQLPLHRRQSFTEKFPTVHPAAIDLIEKMLTFDPRQRITVEEALAHPYLTSLHDISDEPICMTPFSFDFEQHALTEEQMKELIYREALAFNPEYQN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43790		ATMAPK6, MAPK6,...	MAP kinase 6 (.1)		Potri.007G139800 [exp]	0	1	Pt-MPK6.1
AT5G07960			unknown protein		Potri.012G065500 [exp]	6.63	0.7245
AT5G40510			Sucrase/ferredoxin-like family...		Potri.001G344400 [exp]	10.58	0.7777
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Potri.017G027000 [exp]	11.95	0.6940
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.018G085100 [exp]	18.57	0.7501
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.004G115900 [exp]	18.89	0.6524	Pt-AKIN10.2
AT2G30050			transducin family protein / WD...		Potri.015G068900 [exp]	19.13	0.6470
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	23.49	0.6762	AJH1.3
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	30.00	0.6691	ATS9.3
AT3G05530		ATS6A.2, RPT5A	regulatory particle triple-A A...		Potri.013G016800 [exp]	30.46	0.6883	RPT5.2
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.012G024600 [exp]	35.69	0.6930

Compare expression of checked genes

Potri.007G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.