Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25500 654 / 0 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT2G43800 571 / 0 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 494 / 1e-160 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT5G54650 381 / 1e-117 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT3G05470 376 / 6e-116 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 355 / 4e-109 Actin-binding FH2 (formin homology 2) family protein (.1) AT4G15200 348 / 1e-106 AFH3 formin 3 (.1.2) AT3G07540 326 / 1e-97 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 293 / 2e-86 ATFH8 formin 8 (.1) AT1G59910 295 / 9e-86 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G009900 [exp] 1163 / 0 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 671 / 0 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 663 / 0 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.007G054900 [exp] 536 / 1e-176 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.013G017900 [exp] 409 / 9e-128 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 408 / 4e-127 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.001G416100 [exp] 400 / 5e-124 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 396 / 1e-122 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G119900 [exp] 365 / 5e-112 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008739 [exp] 644 / 0 AT5G67470 711 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10002149 [exp] 642 / 0 AT3G25500 717 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Lus10019298 [exp] 525 / 2e-171 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10025195 [exp] 523 / 3e-171 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 522 / 2e-170 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10004505 [exp] 414 / 1e-130 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 394 / 3e-123 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10031496 [exp] 390 / 4e-122 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10015175 [exp] 387 / 1e-120 AT3G05470 635 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10011168 [exp] 385 / 8e-119 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.007G140200.2 pacid=42766780 polypeptide=Potri.007G140200.2.p locus=Potri.007G140200 ID=Potri.007G140200.2.v4.1 annot-version=v4.1 ATGGCCAATACTAGTTCTAGTCTTACAGTAAATACTCTCTTATTCCTTCTCGTCCTTCTGTTCACCACCACGACCTCCACCACTCATCAACGTCACCTCC TCCACCAACCCTTTTTCCCATCTACCACCGCCATTCCACCGACACAACCTCCCTCTTTGTCTCCTCAAACCCAACCCAAATACCCCTTCACTTCCACCCC AAACAAAAACAACAATCTACAAAAGCCCTTTTTCCCTGCCCTCCCTTCACCTCCACCACCTCCTCCCACTTCCACACTTGCTACTTTCCCTGCCAACATC TCCTCCCTCCTCCTCCCTCACCGCTCCTCCTCTCCTCACCACAACCTCATTATCTCCATCTCCATCTCCCTTTCCCTCCTTTTCGCTGCCCTTTTAGCTT TACTTTCAGCCTTTTTCATCTATTCTCGCAGGAGAACCCAGCCTTTTAGTCCTCAAAAGGGTTCAAGATCAGAAAGTCTCCGCCTTTACCCCCAAAACAC TATCCCATCTGATGGTTCTCCAAAGATTCCAAAGCTCCCACACCGTCCTGGTGTCGTAAGCACAAGCTCAGAGTTTCTTTACCTGGGCACATTAGTGAAC TCTCAAGCTGGCATCGATGATCAAGACAAGCCAACTTCAACCAGCAATGCTGTTCTTAAAACTGGTGTTTCATCATCATCTTCTTCACATTATCAAAAAC TTGGGTCACCTGAGCTGAGGCCATTGCCACCATTGCCTAGACATAATTACACACCAACTTATAGAAGTGGTGAAGTTCTTGTTAGTTCAAGTAAAGAAGA TGAAGTTGATAGTGATACCGAGGAGGAAGAGTTCTTTTCGCCAAGAGGGTCTTCTGGGAGGAAAGAGGCTAATCATGAGAGTCTGGTTCGTGTTGATTCA AGTTCTAGAAGAGTGATTCAAGGTATTCAAGGAGAGATTTTTGGGTCTAGAAGTTTTAATTCAAGGACTGCTTCGTATCCATTATCAAATTCTTTTTGTC CATCAAAATCTGTTTCCAGCAGTGTGTCTCCAGTGTCTAATTCTAGCCATAGAAGTGGAAAATCTCAGTCTACTGATACGATTATTAGTTTTCCTGCTCC AGTTCAGTCCATTAAGCAATCCTCGCCGTCCATTTCTCCATCATCATCTGGGAGAAATTCAGGGGAGACGCTGAATTCTCAGGAGCGAAATTCGGGTTTT TCAGGACAGAATGAGCAGGTTCCAGTGAGTGTTGGTAAACAATTTGTTCCACCAAAACTGCCGCCGCCTCCACCTCCACCTCCACCATCGCGATTTTGGG AGATGCCAGTGGGGTTTAGGATGGCTCAGGAAGTGAATTTGGGGATTCCAGGGCCACCAGTTCTTGTTATGCCTGCAAAGCCTGTTTTGGTTCAAGATCA TGCAATGCCAGTTATGGCCAATGAGCAAATGCAAAGCAATGGTAGCGTTGAGAGGAATGAGGAGAGCATGAAGCCGAAGTTGAAGCCTTTACATTGGGAT AAAGTTAGAGCAAGCTCTGACCGGGCTATGGTGTGGGATCAGATAAAATCTAGCTCTTTTCAGTTAAATGAGGAAATGATTGAGACACTTTTTGTGGTAA ACAATCCCAATTTTAATGTGAAAGATCACAATGGAAGGCGCCAATCCCTTCCTTTGCTGAACCAGGAGAATAGAGTGCTTGATCCAAAGAAGTCCCAGAA TATTGCAATATTGTTGAGGGCTCTTAATGTGACCATTGAAGAAGTCTGTGATGCCCTTTTAGAAGGAAATTTAGATACTCTGGGGACAGAGCTTCTTGAA AGCTTATTAAGGATGGCTCCGACTAAAGAAGAAGAATACAAATTAAAAGACTTCAAGGATGAATCACCATTCAAGCTAGGCCCTGCTGAGAAATTCCTCA AGGAAGTGCTTGATGTTCCTTTTGCATTTAAGAGGGTTGATGCAATGCTTTATATTACTAATTTTGATTCAGAAGTTGAGTACCTGAAGAGGTCTTTTGA AACACTGGAGGCAGCTTGCGAAGAATTGAGGAACAGCAGAATGTTCTTGAAACTTCTGGAAGCAGTTCTCAAGACTGGGAACCGTATGAATGTTGGCACC AATCGTGGCGATGCACATGCCTTCAAGCTTGACACGCTTCTTAAGCTTGTTGATATTAAAGGCACTGATGGGAAAACCACTCTCTTGCATTTTGTTGTAC AGGAAATCATCAGATTGGAAGGCTCTCGTCTTTCTGGTACAAACCAGAATCAAACAACCGAGAAAACTCAACAATCTGCATTCCAGGATGAAGTTGAATT TAGGAAGCTTGGTCTGCAAGTAGTTTCAGGTTTGGGTGGAGAGCTTACGAATGTAAAGAAAGCTGCTGCAATGGATTCGGATGTGCTTAGCAGTGAAGTT GCAAAACTTGCAACTGGAATTACGAAAATTACCGAAGTTCTGAAATTAAATGAAGAAATTGCATTGAAGGAGAGTAGCTGGAGGTTCTCAGAGTCAATGA ATGGGTTCATGAAGAAGGCAGAAGAAGAAATTGTAATGCTTCAAGCACAAGAAAAGGCTGCCCTCTCTCTGGTGAAGGAAATAACTGAGTATTTCCATGG GAACTCAGCCAAGGAAGAAGCTCGCCCTTTCCGGATTTTTATGGTGGTGAGGGATTTTCTATCCATTCTTGATCATGTATGCAAAGAAGTCGGAAAGATC AATGAGAGGACCATATGCAGTTCAGCCCGTCCTATGCCTTCAAATCCAACACTTCCACCAGTTTTTCCAGGTCTCATTGGAAGGCATCATTATGGTTCCT CTGATGATGAAAGTTCATCTTCATCGTCATTAGAACACTCCATGTGA
AA sequence Show only first row Show all	>Potri.007G140200.2 pacid=42766780 polypeptide=Potri.007G140200.2.p locus=Potri.007G140200 ID=Potri.007G140200.2.v4.1 annot-version=v4.1 MANTSSSLTVNTLLFLLVLLFTTTTSTTHQRHLLHQPFFPSTTAIPPTQPPSLSPQTQPKYPFTSTPNKNNNLQKPFFPALPSPPPPPPTSTLATFPANI SSLLLPHRSSSPHHNLIISISISLSLLFAALLALLSAFFIYSRRRTQPFSPQKGSRSESLRLYPQNTIPSDGSPKIPKLPHRPGVVSTSSEFLYLGTLVN SQAGIDDQDKPTSTSNAVLKTGVSSSSSSHYQKLGSPELRPLPPLPRHNYTPTYRSGEVLVSSSKEDEVDSDTEEEEFFSPRGSSGRKEANHESLVRVDS SSRRVIQGIQGEIFGSRSFNSRTASYPLSNSFCPSKSVSSSVSPVSNSSHRSGKSQSTDTIISFPAPVQSIKQSSPSISPSSSGRNSGETLNSQERNSGF SGQNEQVPVSVGKQFVPPKLPPPPPPPPPSRFWEMPVGFRMAQEVNLGIPGPPVLVMPAKPVLVQDHAMPVMANEQMQSNGSVERNEESMKPKLKPLHWD KVRASSDRAMVWDQIKSSSFQLNEEMIETLFVVNNPNFNVKDHNGRRQSLPLLNQENRVLDPKKSQNIAILLRALNVTIEEVCDALLEGNLDTLGTELLE SLLRMAPTKEEEYKLKDFKDESPFKLGPAEKFLKEVLDVPFAFKRVDAMLYITNFDSEVEYLKRSFETLEAACEELRNSRMFLKLLEAVLKTGNRMNVGT NRGDAHAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRLEGSRLSGTNQNQTTEKTQQSAFQDEVEFRKLGLQVVSGLGGELTNVKKAAAMDSDVLSSEV AKLATGITKITEVLKLNEEIALKESSWRFSESMNGFMKKAEEEIVMLQAQEKAALSLVKEITEYFHGNSAKEEARPFRIFMVVRDFLSILDHVCKEVGKI NERTICSSARPMPSNPTLPPVFPGLIGRHHYGSSDDESSSSSSLEHSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.007G140200 [exp]	0	1
AT4G14420			HR-like lesion-inducing protei...		Potri.005G222200 [exp]	4.69	0.8421
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.008G185500 [exp]	5.91	0.8357
AT5G08580			Calcium-binding EF hand family...		Potri.007G076300 [exp]	10.90	0.8097
AT5G56580		ANQ1, ATMKK6	ARABIDOPSIS THALIANA MAP KINAS...		Potri.018G068500 [exp]	13.07	0.8453	Pt-MKK6.1
AT3G16850			Pectin lyase-like superfamily ...		Potri.010G005500 [exp]	19.62	0.8385
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Potri.002G084800 [exp]	25.45	0.8420
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G062100 [exp]	26.38	0.8395
AT2G38680			5'-nucleotidases;magnesium ion...		Potri.010G243900 [exp]	28.46	0.7747
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	45.27	0.7491
AT5G12970			Calcium-dependent lipid-bindin...		Potri.001G015700 [exp]	45.69	0.8067

Compare expression of checked genes

Potri.007G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.