Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43840 375 / 3e-127 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G43820 366 / 5e-124 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05680 315 / 4e-104 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 309 / 1e-101 UDP-Glycosyltransferase superfamily protein (.1) AT2G31790 291 / 1e-94 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 290 / 4e-94 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT1G24100 283 / 1e-91 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15480 226 / 3e-69 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 213 / 5e-64 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15490 212 / 6e-64 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G117200 [exp] 715 / 0 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.007G140500 [exp] 475 / 1e-166 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 365 / 2e-123 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 361 / 6e-122 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 352 / 3e-118 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.015G071900 [exp] 344 / 3e-115 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1) Potri.017G032500 [exp] 332 / 2e-110 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 325 / 1e-107 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 323 / 4e-107 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009412 [exp] 414 / 2e-142 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 411 / 2e-141 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10008742 [exp] 393 / 4e-134 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020559 [exp] 387 / 7e-132 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 366 / 1e-123 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 350 / 2e-117 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10010712 [exp] 340 / 2e-113 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006353 [exp] 338 / 9e-113 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006721 [exp] 334 / 2e-111 AT2G43820 392 / 9e-134 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10017825 [exp] 318 / 6e-105 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.007G140600.2 pacid=42766202 polypeptide=Potri.007G140601.1.p locus=Potri.007G140600 ID=Potri.007G140600.2.v4.1 annot-version=v4.1 ATGGAAAACATGGTGAATACGAGCCATGTACTAGTAGTTCCACTGCCAGGCGCAGGCCACGTAAATCCCATGCTGCAGTTCTCTAGGCGTTTGGTCTCCA AAGGGCTCAAAGTCACCTTCATAATCACCAAATTCATATCCAAGTCCAGGCAACTTGGCTCATCAATTGGTTCCATTCAACTCGATACCATATCAGATGG CTATGACGATGGATTTAATCAAGCTGGTAGCAGGGAACCCTATCTTTCAAGCCTACATGATGTTGGTCCAAAAACCCTATCAGAACTCATCAAGAGATAC CAAACCTCTTCAAGCCCTATCCATGCTGTAATATACGAGCCTTTCTTGGCTTGGGCTCTGGATGTGGCAAAGGATTTTGGGTTATTTGCAGCTGCTTTTT TTACATGCTTATGCCAGTTACTTCAACCCGTGTTGATCGAGGGATTACCACTACTGCTTGAGCTTCAAGACTTGCCAACATTTGTTGTTCTGCCAGATTC ATATCCTGCTAATGTTAAGATGACCATGAGTCAGTTTGCTAATCTGGACAAGGCTGATTGGATCCTCATCAACACTTTCTACAAGCTGGAGTGTGAGGTA GTGGATACAATGTCAAAAGTTTGTCCATTATTGACAATTGGACCAACAATCCCATCAATATACTTGGACAAGAGTATTGAAGATGAGGATGACTACGGTA TTAGTCTCTGTGAAATAGACGCATCTCTTTCTATAAATTGGCTCAGGACTAAGCCCACTACATCAGTTGTATATATGTCCTTTGGTAGCTGTGCTACTCT AAGCAGCAAGCAAATGGAGGAAATTGCGTGGGGCTTAAAGAGGAGCAATTTTCACTTTTGGTTTGTTGAAGAAGTGGAGAATAAGGGATTGGCAGTGAAT TGGAGTCCCCAAGTGAAAGTGCTAGCAAATGAGGCTGTGGGATGTTTTTTCACACATTGCAGTTGGAACTCAACAATCGAGGTATTGAGCTTGGGTGTGC CAATGGTGACAATGCCAGGATGGAGTGATCAACAAACAAATTCTAAAATCGTTGAAGATGCTTGGAAGGTGGGAGTCAGAGCTAAGGTTGATGAGCATGG AATTGTGAAAAGAGAAGAGATTGCCATTTGCATAAAAGAAGTGATGGAGGGAGATAGAGGCAAAGAAATGAAAATGAATTCCAAGAAATGGAAAGATGAT GGGGACATCGAACCGGAAACATTGTGA
AA sequence Show only first row Show all	>Potri.007G140600.2 pacid=42766202 polypeptide=Potri.007G140601.1.p locus=Potri.007G140600 ID=Potri.007G140600.2.v4.1 annot-version=v4.1 MENMVNTSHVLVVPLPGAGHVNPMLQFSRRLVSKGLKVTFIITKFISKSRQLGSSIGSIQLDTISDGYDDGFNQAGSREPYLSSLHDVGPKTLSELIKRY QTSSSPIHAVIYEPFLAWALDVAKDFGLFAAAFFTCLCQLLQPVLIEGLPLLLELQDLPTFVVLPDSYPANVKMTMSQFANLDKADWILINTFYKLECEV VDTMSKVCPLLTIGPTIPSIYLDKSIEDEDDYGISLCEIDASLSINWLRTKPTTSVVYMSFGSCATLSSKQMEEIAWGLKRSNFHFWFVEEVENKGLAVN WSPQVKVLANEAVGCFFTHCSWNSTIEVLSLGVPMVTMPGWSDQQTNSKIVEDAWKVGVRAKVDEHGIVKREEIAICIKEVMEGDRGKEMKMNSKKWKDD GDIEPETL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G140600 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Potri.006G275000 [exp]	1.73	0.9069	Pt-VHA1.2
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.018G070400 [exp]	2.00	0.9231
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	5.47	0.9133
AT1G07230		NPC1	non-specific phospholipase C1 ...		Potri.009G045100 [exp]	11.83	0.8982
AT5G64230			unknown protein		Potri.017G053200 [exp]	12.24	0.8959
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	16.15	0.8916	PDS1.2
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	18.46	0.8912
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.001G258100 [exp]	19.18	0.9061
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	19.74	0.8724
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150000 [exp]	19.89	0.8663

Compare expression of checked genes

Potri.007G140600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.