Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05680 358 / 2e-120 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 353 / 7e-119 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 319 / 3e-105 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT2G31750 311 / 2e-102 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 306 / 4e-100 UDP-Glycosyltransferase superfamily protein (.1) AT2G43840 303 / 4e-99 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT1G24100 278 / 2e-89 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT4G15490 209 / 1e-62 UGT84A3 UDP-Glycosyltransferase superfamily protein (.1) AT3G21560 206 / 2e-61 UGT84A2 UDP-Glycosyltransferase superfamily protein (.1) AT4G15480 204 / 1e-60 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G389200 [exp] 508 / 4e-179 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 423 / 4e-146 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.004G179300 [exp] 402 / 8e-138 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032300 [exp] 396 / 2e-135 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G032733 [exp] 385 / 7e-131 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 385 / 7e-131 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 383 / 3e-130 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.014G175000 [exp] 348 / 2e-116 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.015G071900 [exp] 328 / 5e-109 AT1G24100 427 / 5e-147 UDP-glucosyl transferase 74B1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008742 [exp] 362 / 8e-122 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10010712 [exp] 315 / 1e-103 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10006353 [exp] 315 / 2e-103 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10009412 [exp] 309 / 3e-101 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020556 [exp] 305 / 2e-99 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 303 / 6e-99 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024117 [exp] 295 / 2e-95 AT1G05675 385 / 4e-130 UDP-Glycosyltransferase superfamily protein (.1) Lus10006352 [exp] 294 / 2e-95 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10017825 [exp] 290 / 7e-94 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024118 [exp] 278 / 4e-89 AT1G05675 375 / 2e-126 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.007G140700.1 pacid=42764894 polypeptide=Potri.007G140701.1.p locus=Potri.007G140700 ID=Potri.007G140700.1.v4.1 annot-version=v4.1 ATGGTCAAGGAAAAAAGAGTTAGGGAGAGTCATGTCCTAGTACTCCCTTTGCCTCTGCAGGGTCATATAAACCCAATGCTGCAATTTTCCAAACGTCTAG CCTCAAAAGGCCTCAAGGTCACGCTCATCATCACCCCTTCTATTGCCAAGTCTATGCAAGGCCAAGATAGTTCCATCAATTTGGAACCAATCTTTGATGG ATCCAAGGAAGGTGAAATGACAATAAACATTGATAAGTATTTCGAGCGTTACAAGCTCACAATGCCTCACAGCTTATCCAACCTCATTGATAGATATAAT GGTAGTGAATATCCCGTTAAGTTTCTCATATATGATTCTGTCCTACCATGGGCATTAGATATGGCTCGAAATAAAGGCATAGAAGGTGGTCCATTTTTCA CTCAATCTTGTGCAGTTACTGCTGTTCTTTATCATGCCGCTCAGGGGGCATTTCAAGTTCCAGTAGAAGAGTATGATCAGGCAGCCGTGTCCTTGCCTTC GTTGGAAAATTTGGAGTTCAATGATCTACCATCATTTGTTAGTGATGCAGGTTCATATCCAGCTATACGAGAACTCCTCCTTGGTCACTTGAAGTTGAAG TGTGAACTCCTATTCCTTCATAATATAGTAGTGAACTGGATGAGAATCAATAAATGGCCAATCAAACCAATAGGACCAATGATTCCATCAATGTTCTTGG ACAAGCGGTTGGGATATGACAAAGATTATGGCTTAAACCTTTTCAAGCCCAATTCAGATGCTTGCATGAAGTGGATGGACTTGAAGGAACCAGGGTCAGT TGTGTATGTCTCATTTGGAAGCCTGGCTGCCGTCGGAGAAGAGCAAATGGCAGAGCTGGCCTGGGTTTTGGCTCACAAATTAGTTGGATGCTTCATGACT CATTGTGGGTGGAACTCAACACTCGAGGCATTGAGCTTAGGAGTGCCAATGGTGGCAATGCCACAGTGGACTGATCAACCAACCAATGCTAAGTATATCA CTGATGTTGGGCATGTAAGAGTTAGAGTAAATGTAAATGAAAAGGGGATTGTCACCAAAGAAGAGGTAGAAAGGTACATAAGGGAAGTCATGGAAAGTGA AAGAAGCAATGCGATAAGAGGGAATTTTGATAAATGGAAGAAATTAGCCCAAACGGCAGTAGATATAGGTGGGAGCTCTGATAAGAATATTGAGGAGTTT GTAACTGAGGTTGCTTGCACGTCCCAAAGGTATCGTAAAGTGAGGCACTTGCTGTCTTGA
AA sequence Show only first row Show all	>Potri.007G140700.1 pacid=42764894 polypeptide=Potri.007G140701.1.p locus=Potri.007G140700 ID=Potri.007G140700.1.v4.1 annot-version=v4.1 MVKEKRVRESHVLVLPLPLQGHINPMLQFSKRLASKGLKVTLIITPSIAKSMQGQDSSINLEPIFDGSKEGEMTINIDKYFERYKLTMPHSLSNLIDRYN GSEYPVKFLIYDSVLPWALDMARNKGIEGGPFFTQSCAVTAVLYHAAQGAFQVPVEEYDQAAVSLPSLENLEFNDLPSFVSDAGSYPAIRELLLGHLKLK CELLFLHNIVVNWMRINKWPIKPIGPMIPSMFLDKRLGYDKDYGLNLFKPNSDACMKWMDLKEPGSVVYVSFGSLAAVGEEQMAELAWVLAHKLVGCFMT HCGWNSTLEALSLGVPMVAMPQWTDQPTNAKYITDVGHVRVRVNVNEKGIVTKEEVERYIREVMESERSNAIRGNFDKWKKLAQTAVDIGGSSDKNIEEF VTEVACTSQRYRKVRHLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.007G140700 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G015900 [exp]	15.00	0.9373
AT4G00350			MATE efflux family protein (.1...		Potri.017G016450 [exp]	21.86	0.8477
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Potri.018G107700 [exp]	22.58	0.9225
					Potri.003G013400 [exp]	27.38	0.8782
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116000 [exp]	27.94	0.8787
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.016G120466 [exp]	31.78	0.8731
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.008G098850 [exp]	31.84	0.9220
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.003G017566 [exp]	36.18	0.9080
AT1G15170			MATE efflux family protein (.1...		Potri.008G126500 [exp]	36.33	0.8508
AT3G60300			RWD domain-containing protein ...		Potri.014G048000 [exp]	38.52	0.9047

Compare expression of checked genes

Potri.007G140700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.