Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 334 / 1e-104 PR5K PR5-like receptor kinase (.1) AT5G38260 329 / 7e-103 Protein kinase superfamily protein (.1) AT1G70250 331 / 6e-102 receptor serine/threonine kinase, putative (.1) AT1G66910 325 / 6e-101 Protein kinase superfamily protein (.1) AT1G66920 322 / 1e-100 Protein kinase superfamily protein (.1.2) AT4G18250 328 / 3e-100 receptor serine/threonine kinase, putative (.1) AT5G39020 326 / 6e-100 Malectin/receptor-like protein kinase family protein (.1) AT1G66980 332 / 1e-99 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT5G39030 323 / 6e-99 Protein kinase superfamily protein (.1) AT1G67000 319 / 1e-96 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G117050 [exp] 1145 / 0 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.007G141450 [exp] 1130 / 0 AT5G38280 336 / 2e-105 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 863 / 0 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G009400 [exp] 855 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 852 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G009500 [exp] 838 / 0 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 832 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.017G008800 [exp] 823 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.007G140800 [exp] 611 / 0 AT5G38280 333 / 1e-107 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 546 / 0 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 452 / 6e-150 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 429 / 5e-142 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 419 / 4e-136 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 400 / 2e-134 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008362 [exp] 380 / 1e-123 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025553 [exp] 345 / 8e-109 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 331 / 5e-108 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025547 [exp] 333 / 7e-105 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 329 / 5e-104 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF13947 [poplar] [flax] GUB_WAK_bind Wall-associated receptor kinase galacturonan-binding
Representative CDS sequence Show only first row Show all	>Potri.007G141125.1 pacid=42764855 polypeptide=Potri.007G141125.1.p locus=Potri.007G141125 ID=Potri.007G141125.1.v4.1 annot-version=v4.1 ATGTTGAGTGGAATATTAAAGCACCTTTTCGGTGCATATCCAGCCCTTCTTCTTCTAGTCATCCTAGCCGGCCACCAGGGTTGCAGTGCTAGAAAGAACA GTGTTTACTGCGCTCCATCTTCTTGCGGCAACATCCATAATATTAGCTTCCCTTTTCGACTAAGTACCGATCCCAATAGCTGCGGCAACAAAAAATATGA ACTTAGTTGTGAAAACAACCGCCCAGCTTTATACTTGAAGAATAAGGGGGCAAAATATTACGTCCAGGCAATCGATTACAGCAACTTCACGATTCGAGTT GTAGATGCTGATGTTCAGAAGGATGATTGCTTCTCTATCCCTCGTCATTCTTTAATCGTAGATCCTTCCTCCGACACCAGTCAATATCATATGGATTATC TTCCATATGAAATTTTCTGGCTCGATAACTTTTATCTTTACAACTTTACAACTTTTATTTTTATAAGTTGCCCAAATCCAATACTGAAGGGTTATTCAGA CTATATTGTGGATACTTCTTCATGCAAAAATGGTAGTAGTCTTTTTAATTCCCTCAATATGGAGGGTTATTCCAGCTATGTCTTAATTGGTTATTTTTCC TTCGGGGAGATACCGGACTCGTGCCATGTAAATTTGATATATCCCCTGCATCTCACTTTTGATCAGCTGAAAAATGGGACCAATATTTCCTATATAGATG TCCAAGATAGTATTCTATATGGGTTTTATCTTTCATGGTCTCGGGCCTGTTGTGATTTTCTGAAAGAGAACCGCTGCAAACTTGATGAAGCCAACATAAA CAAGTATTGCAACTTAATAAGGGGTGGTCCGATCAGAATTGCAATAGATTTTCTGACTAATCGTATACTCAGTTATCTTGTCGTATGGCCGCTAGACAGG TATTTACCAGATGGCGAATGGATACAATATTATCAAAGCTCGAGGAAACCACGATTGAAATTCAACTTTTATAGAAACGGACCTAATTCTTTTCCTTATA TCACGAAGACGATCTCTTCGGATGCACTAAGCATTTTCATAGTTTTGCTCATTACACTACTTGTGCTCATCGGGATATATCACACATTATTATTCCTTTG TGGGCTTCCATGTCTTATAACCTTATTGGTCTACAAATGGCGAAGAAGGCATTTATCAATGTTTGGTAACATAGAAGAATTCTTGCAAAGTCATGATCAT AATCTCACGCTTATAAGGTACTCTTACTCGGAGATTAAGAAGATAACTCACGGATTCAATGACAAGTTAGGTGAAGGAGGTTATGGCTCGGTGTACAAAG GAAAGCTTCGTAGTGGTCGTTTCGCGGCTGTAAAAATTTTGCGCAAAGAAAAAGCTAATGGGCAAGACTTTATCAATGAAGTTGCCACCATTGGAAGAAT TCACCATTGCAATGTGGTGCAACTCATAGGCTTTACTGTTGAGGGCTCGAAGCGTGCTCTTATATATGAGTTCATGCCTAATGGATCTCTTGAAAAATAT ATTTTTTCTAGGCAAGGAAGCATACCGTTGAGTAACCAGAAAATATATGAAATTTCTCTAGGGGTGGCTCGTGGCATTGAATATCTACATGAAGGTTGTG ACATGCAGATTTTGCATTTTGACATCAAGCCTCACAACATTCTTCTCGATGAAAATTTCACTCCAAAAGTCTCAGATTTTGGACTTGCAAAATTGTATCC GACTAATAATAGCGTTGTGTCCCTTACCATGGCTAGAGGAACGATGGGATACATGGCTCCTGAGTTATTTTACAAAAGTATCGGAGGCGTTTCTTACAAA GCTGATGTTTATAGTTTTGGGATGTTATTGATGGAAATGGTTGGGAGAAGGAAAAATCTAAATGCATTGACAGATCATTCAAGTCAGATGTACTTCCCTT CATGGATTTATGACCAGGTTAATGAAGGAAGGAATATACTTGAAGATCAAGCAACAGAGCAGGAAAAGAATACAATAAAAAAGATGACTATAGTGGCATT ATGGTGCATACAATTGAAGCCTATTGATCGTCCCTCGATGCACAGAGTTGTACAGATGCTTCAAGCAGATATTGAATCTCTACAAATGCCTCCTAAGCCT TTTCTCGTTCCACAACAGACATCAAATGATGATAGGATCAATATGGCTAATCCAACAAGTTTAAGAGATCCGTCCAATGGTTGTAGCATCGATTCTTCAT ATCAATTTGGTCGTTGA
AA sequence Show only first row Show all	>Potri.007G141125.1 pacid=42764855 polypeptide=Potri.007G141125.1.p locus=Potri.007G141125 ID=Potri.007G141125.1.v4.1 annot-version=v4.1 MLSGILKHLFGAYPALLLLVILAGHQGCSARKNSVYCAPSSCGNIHNISFPFRLSTDPNSCGNKKYELSCENNRPALYLKNKGAKYYVQAIDYSNFTIRV VDADVQKDDCFSIPRHSLIVDPSSDTSQYHMDYLPYEIFWLDNFYLYNFTTFIFISCPNPILKGYSDYIVDTSSCKNGSSLFNSLNMEGYSSYVLIGYFS FGEIPDSCHVNLIYPLHLTFDQLKNGTNISYIDVQDSILYGFYLSWSRACCDFLKENRCKLDEANINKYCNLIRGGPIRIAIDFLTNRILSYLVVWPLDR YLPDGEWIQYYQSSRKPRLKFNFYRNGPNSFPYITKTISSDALSIFIVLLITLLVLIGIYHTLLFLCGLPCLITLLVYKWRRRHLSMFGNIEEFLQSHDH NLTLIRYSYSEIKKITHGFNDKLGEGGYGSVYKGKLRSGRFAAVKILRKEKANGQDFINEVATIGRIHHCNVVQLIGFTVEGSKRALIYEFMPNGSLEKY IFSRQGSIPLSNQKIYEISLGVARGIEYLHEGCDMQILHFDIKPHNILLDENFTPKVSDFGLAKLYPTNNSVVSLTMARGTMGYMAPELFYKSIGGVSYK ADVYSFGMLLMEMVGRRKNLNALTDHSSQMYFPSWIYDQVNEGRNILEDQATEQEKNTIKKMTIVALWCIQLKPIDRPSMHRVVQMLQADIESLQMPPKP FLVPQQTSNDDRINMANPTSLRDPSNGCSIDSSYQFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	0	1
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	2.00	0.9947
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010000 [exp]	5.29	0.9769
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Potri.019G004400 [exp]	7.21	0.9854
AT5G35390			Leucine-rich repeat protein ki...		Potri.006G078600 [exp]	7.48	0.9734
AT5G09280			Pectin lyase-like superfamily ...		Potri.001G007400 [exp]	9.38	0.9585
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G117050 [exp]	9.69	0.9680
AT2G01340		At17.1	unknown protein		Potri.004G088200 [exp]	11.61	0.9737
AT1G78980		SRF5	STRUBBELIG-receptor family 5 (...		Potri.014G001200 [exp]	12.24	0.9837
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Potri.006G158700 [exp]	12.48	0.9780
AT5G63520			unknown protein		Potri.012G100600 [exp]	14.28	0.9793

Compare expression of checked genes

Potri.007G141125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.