Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38280 336 / 3e-105 PR5K PR5-like receptor kinase (.1) AT5G38260 333 / 2e-104 Protein kinase superfamily protein (.1) AT4G18250 333 / 5e-102 receptor serine/threonine kinase, putative (.1) AT1G70250 330 / 9e-102 receptor serine/threonine kinase, putative (.1) AT1G66910 323 / 3e-100 Protein kinase superfamily protein (.1) AT1G66980 332 / 1e-99 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT1G66920 318 / 3e-99 Protein kinase superfamily protein (.1.2) AT5G39020 323 / 1e-98 Malectin/receptor-like protein kinase family protein (.1) AT5G39030 322 / 2e-98 Protein kinase superfamily protein (.1) AT1G67000 318 / 4e-96 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G141125 [exp] 1126 / 0 AT5G38280 335 / 9e-105 PR5-like receptor kinase (.1) Potri.007G117050 [exp] 1124 / 0 AT5G38280 338 / 5e-106 PR5-like receptor kinase (.1) Potri.017G009400 [exp] 827 / 0 AT5G38280 329 / 4e-103 PR5-like receptor kinase (.1) Potri.017G009600 [exp] 811 / 0 AT4G18250 323 / 1e-98 receptor serine/threonine kinase, putative (.1) Potri.017G009500 [exp] 806 / 0 AT5G38280 327 / 3e-102 PR5-like receptor kinase (.1) Potri.017G009100 [exp] 804 / 0 AT5G38280 331 / 1e-103 PR5-like receptor kinase (.1) Potri.017G008800 [exp] 801 / 0 AT5G38280 330 / 1e-103 PR5-like receptor kinase (.1) Potri.017G007900 [exp] 795 / 0 AT5G38260 324 / 1e-101 Protein kinase superfamily protein (.1) Potri.004G179400 [exp] 583 / 0 AT5G38280 258 / 2e-80 PR5-like receptor kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025492 [exp] 469 / 2e-156 AT5G38260 326 / 1e-102 Protein kinase superfamily protein (.1) Lus10014924 [exp] 451 / 1e-149 AT1G67000 349 / 5e-112 Protein kinase superfamily protein (.1) Lus10022359 [exp] 428 / 2e-141 AT1G66980 322 / 3e-101 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10008335 [exp] 417 / 2e-135 AT1G70250 316 / 8e-98 receptor serine/threonine kinase, putative (.1) Lus10025545 [exp] 399 / 4e-134 AT5G39020 316 / 1e-101 Malectin/receptor-like protein kinase family protein (.1) Lus10008362 [exp] 375 / 5e-122 AT1G66930 250 / 7e-75 Protein kinase superfamily protein (.1) Lus10025553 [exp] 346 / 5e-109 AT1G70250 341 / 4e-108 receptor serine/threonine kinase, putative (.1) Lus10027085 [exp] 329 / 2e-107 AT1G66980 275 / 1e-84 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10025547 [exp] 336 / 4e-106 AT1G66920 345 / 2e-111 Protein kinase superfamily protein (.1.2) Lus10026761 [exp] 332 / 2e-105 AT1G67000 334 / 4e-107 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.007G141450.1 pacid=42766183 polypeptide=Potri.007G141450.1.p locus=Potri.007G141450 ID=Potri.007G141450.1.v4.1 annot-version=v4.1 ATGTTGAGTGGAATATCAAAGCACCTTTTCGGTGCATATCCAGCCCTTCTTCTTCTAGTCGTCCTAGCCGGCCACCAGAGTTGCAGTGCTAGAAAGAACA GTACTGTTTACTGTGCTCCTTCTTCCTGTGGCAACATCCATAATATTAGCTACCCTTTTCGACTAAGTACCGATCTCAATAGCTGCGGCAACCAAAAATA TGAACTTACTTGTGAAAACAACCGCCCAGCTTTATACTTGAAAGCTTTATACTTGAATGAGACGGTAAAATATTACGTCCAGGCAATCGATTACAGCAAC TTCACGATTCGACTTGTGGATGCTGATGTTCAGAAGGATGATTGCTTCTCTATCCCTCGTCATTCTTTAACCAACGATTATTTATCCTACAACTGGGATT ATTATCTTTCATATTATACATCAACTTTTGTTTTTATGAGTTGCCCAAATCCAATACTGATCAGTCCTTCATACAATATTGTGGATGCTTCTTCATGCAA AAATGGTAGTACTCTTTTTAATTCTACATCTAATATTTCTTCTCCGAGTTCCCAGAATTATTCCTATGTCTTTATTGCCTATGCCCATTCCTATGATGAT TACTGGAGGGACATACAAGACTTGTGCCATGTAAATTTGATGTATCCCGCGTCTTTCACTTTTGATCAGCCGACAAATGAGACCACTATTATTTCCTATA TAGATGTCCACGATAGTATTCTATATGGGTTTGATCTTTCATGGTCTTGGGCCTGTTGTGATTTTCTGAAAGAGAACCGCTGCAAACTTGATAAAGCCGA CCTAAGCATGTATTGCGATGTAGGATTAAGCGCTTCTCCGATCCAATTTGCAACAGGTTATTTGACTATTTGTCTCAATTTTCTTGTTGTATGGCCGCTA AACAAGTTTTCACGAGCTGACTATTGGATAGCATATGAAAGATCGAGGCAATCGTCATATTTGGAATTCAACTATCATAAAAACGGAAATTATACCACGA AGACCAAGACCATCTCTAATTCGGATGCACTAAGCATTCTCATAGTTTTGCTCATTACACTACTTGTGCTCATCGGGATATATCATATATTATTATTCAT TTGTGGGTTTCCATGTCTCATAACCTTATTGGTCTATACATGGCGAAGAAGGCATTTATCAATGTTTGGTAACATAGAAGAATTCTTGCAAAGTCATGAT CATAATCTCACGCTTATAAGGTACTCTTACTCGGAGATTAAGAAGATAACTCATGGATTCAATGACAAGTTAGGTGAAGGAGGTTATGGCTCGGTGTACA AAGGAAAGCTTCGTAGTGGTCGTTTTGCGGCTGTAAAAATTTTGCGCAAAGAAAAAGCTAATGGGCAAGAATTTATCAATGAAGTTGCCACCATTGGAAG AATTCACCATTGCAATGTGGTGCAGCTCATAGGCTTTACTGTTGAGGGCTCAAAGCGTGCCCTTATATATGAGTTCATGCCTAATGGATCTCTTGAAAAG TATATTTTTTCTAGGCAAGGTTGCATACCGCTGAGCAACCAAAAAATATATGAAATTTCTCTTGGGGTGGCTCGTGGCATTGAATATCTACATGAAGGTT GTGACATGCAAATTTTACATTTTGACATCAAGCCTCACAACATTCTTCTCGATGAAAATTTCACTCCAAAAGTCTCAGATTTTGGACTTGCAAAATTATA TCCAACTAATAATAGTGTTGTATCCCTCACTATGGCTAGAGGAACGATGGGATACATGGCTCCTGAGTTATTTTACAAAAGTATCGGAGGCGTCTCTTAC AAAGCCGATGTCTATAGTTTTGGGATGTTGTTGATGGAAATGGTTGGGAGAAGGAAAAATCTGAATGCATTGGCAGATCATTCAAGCCAGATGTACTTCC CTTCATGGATTTATGATCAGGTTAATGAAGGAAGGGATATACTTGAAGATCAAGCGACAGAGCAGGAAAAGAATACAATAAAAAAGATGACTATAGTGGC ATTATGGTGCATACAATTGAAGCCTATTGATCGTCCCTCGATGCACAGAGTTGTACAGATGCTTGAAGCAGATATTGAATCTCTACAAATACCTCCTAAG CCTTTTCTCGTTCCACAACAGACATCAAATGATGATAGGATCAATGTGGTTAATCCAACAAGTTTAAGAGATCCGTCAAATGTTTGTAGCATCGATTCTT CATATCAGTTTGGTCGTTGA
AA sequence Show only first row Show all	>Potri.007G141450.1 pacid=42766183 polypeptide=Potri.007G141450.1.p locus=Potri.007G141450 ID=Potri.007G141450.1.v4.1 annot-version=v4.1 MLSGISKHLFGAYPALLLLVVLAGHQSCSARKNSTVYCAPSSCGNIHNISYPFRLSTDLNSCGNQKYELTCENNRPALYLKALYLNETVKYYVQAIDYSN FTIRLVDADVQKDDCFSIPRHSLTNDYLSYNWDYYLSYYTSTFVFMSCPNPILISPSYNIVDASSCKNGSTLFNSTSNISSPSSQNYSYVFIAYAHSYDD YWRDIQDLCHVNLMYPASFTFDQPTNETTIISYIDVHDSILYGFDLSWSWACCDFLKENRCKLDKADLSMYCDVGLSASPIQFATGYLTICLNFLVVWPL NKFSRADYWIAYERSRQSSYLEFNYHKNGNYTTKTKTISNSDALSILIVLLITLLVLIGIYHILLFICGFPCLITLLVYTWRRRHLSMFGNIEEFLQSHD HNLTLIRYSYSEIKKITHGFNDKLGEGGYGSVYKGKLRSGRFAAVKILRKEKANGQEFINEVATIGRIHHCNVVQLIGFTVEGSKRALIYEFMPNGSLEK YIFSRQGCIPLSNQKIYEISLGVARGIEYLHEGCDMQILHFDIKPHNILLDENFTPKVSDFGLAKLYPTNNSVVSLTMARGTMGYMAPELFYKSIGGVSY KADVYSFGMLLMEMVGRRKNLNALADHSSQMYFPSWIYDQVNEGRDILEDQATEQEKNTIKKMTIVALWCIQLKPIDRPSMHRVVQMLEADIESLQIPPK PFLVPQQTSNDDRINVVNPTSLRDPSNVCSIDSSYQFGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141450 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G124400 [exp]	1.00	0.9937
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.005G007900 [exp]	3.16	0.9764
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	4.69	0.9869
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	8.71	0.9774
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	10.58	0.9651
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	10.81	0.9740
					Potri.017G111150 [exp]	15.87	0.9719
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G063300 [exp]	16.52	0.9707
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	17.86	0.9744	Pt-AO1.3
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	17.97	0.9708

Compare expression of checked genes

Potri.007G141450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.