Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59820 840 / 0 LETM1-like protein (.1.2) AT1G65540 818 / 0 LETM1-like protein (.1) AT4G37010 42 / 0.0005 CEN2 centrin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G078600 [exp] 879 / 0 AT1G65540 915 / 0.0 LETM1-like protein (.1) Potri.010G178400 [exp] 848 / 0 AT1G65540 889 / 0.0 LETM1-like protein (.1) Potri.001G187100 [exp] 44 / 0.0004 AT5G06220 145 / 1e-35 LETM1-like protein (.1.2) Potri.005G138000 [exp] 41 / 0.0008 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027069 [exp] 850 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2) Lus10025602 [exp] 848 / 0 AT3G59820 917 / 0.0 LETM1-like protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07766 [poplar] [flax] LETM1 LETM1-like protein
Representative CDS sequence Show only first row Show all	>Potri.007G142000.1 pacid=42765904 polypeptide=Potri.007G142000.1.p locus=Potri.007G142000 ID=Potri.007G142000.1.v4.1 annot-version=v4.1 ATGGCTGCCAGAGCAATTTTCATAAGGAATAAATTGGCTTCTTACTACTTCAATCCTTCGTCAACTCGTTCTCTTCAGAGTTTCCAGTCCATCGCCGATG CACTCCACTCTTCCGATTCCCGATGTTTTAGCTGTCCGGCGAGTTACCATTTTAATTCCGACGATCGGTTGAGAGAAACAGTGAAAAAAGCCGAATGTTT TGGATTTTCTGGTGTAAGAAATGTTGGGTATTGCTTTAATGGGAGTTTGGTCGGTCCGCGTTTTGTGGATGGGAGGTTTAGGTTGGGAGATGGAATTTTA GTTCGGTATGCGTCAACGGTGGCGGTCAAGAGGTTGCCGCCGGAGTATGACAGTGATGATGAGGAGGGTAAGGAAATGGTTGGTAAGAAGAGGAAAGAGG CGTCAGCGGATGAGTGTGATCAAGCGGTGGAGGGATTGAGTTCGGCGAAGGCGAAGGCGAAGGCGAAGAGGTTGAATGAATCTATGAAAGCTGAGAAGTC GGTTTTGCAGAGAACTTGGGCTGCTCTTCTTGGTCTTGGCCCGGCTTTACGAGCTGTAGCGTCGATGAGCAGGGAGGATTGGGCGAAGAAACTTGTGCAC TGGAAGCATGAAATTGTGTCGACATTGCAGCATTATTGGTTAGGGTTTAAGCTATTGTGGGCTGATGTGAGGATTTGTTCGAGATTGTTGTTAAAACTTG CTGGTGGGAAGAGTTTGTCGAGGAGGGAGAGGCAACAGTTGACGAGAACTACTGCAGATATTTTCAGATTAGTTCCATTTGCTGTTTTTATCATTGTTCC GTTCATGGAGTTTCTGTTACCGGTGTTTTTGAAGTTGTTCCCTAACATGTTGCCATCTACATTTCAAGACAAGATGAAAGAGCAGGAAGCATTGAAAAGG AGGCTAAATGCAAGAATAGAATATGCCAAGTTTCTTCAGGATACAGTGAAAGAAATGGCTAAGGAAGTTCAGAACTCACGAAGTGGAGAAATTAAGAAAA CTGCTGAAGATCTTGATGATTTTTTGAACAACGTTAGGAGAGGCTCCATTGTTTCTAATGATGAAATTTTGGGCTTTGCTAAGCTTTTCAATGATGAATT AACTTTGGACAATATCAGCAGGCCTCGATTGGTCAATATGTGCAAATACATGGGAATCAGTCCTTTCGGAACAGATGCGTATTTGCGTTACATGCTCCGC AAAAGACTCCAGAGGATTAAGAATGATGACAGGTTAATTCAAGCAGAGGGTGTGGAGTCTCTTTCAGAGGCTGAACTCCGTGAAGATTGTAGGGAGCGAG GCATGCTTGGATTGCTCTCAGTTGAAGAAATGCGGCAACAGCTTCATGATTGGTTGGATCTGTCTCTCAATCACTCTGTGCCATCTTCCCTTTTGATCCT TTCAAGGGCCTTCACTGTATCTGGAAAATTGAAACCTGAGGAAGCTGTTCGGGCAACACTATCTTCCTTACCTGATGAGGTTGTGGATACTGTTGGTGTT ACTGCTTTACCATCTGAAGATTCTGTTTCAGAAAGAAGAAGGAAACTGGAATACCTTGAGATGCAGGAAGAAATGATCAAGGAGGAAGAAGAGGACGAGG AAGAAGAGCGTGCCAGAATGAAAGAGTCTAAAGTTAGTGAAGAGGATGTAGCTTTGAAAGAGATGACCCTGTCAACAGCAAGAGAAGCGCAAGAAATGGC TAGAGCAAGTACATTGGAGAAACAAGAGCATCTCTGTGAACTTAGTCGTGCGTTGGCTGTTTTAGCTTCAGCATCTTCAGTAAGCAGAGAGCGTGAGGAG TTCCTGGGCCTTGTCAACAAGGAGATAGAACTTTATAATAGCATGGTAGAAAAAGAGGGAAATGATGGTGAAAAGGAGGCTGTTAAGGCATATAGAGCTG CCCGAGAGGAAACTGATCGAGCTTCTGAAGCGGATGAACGAGATGAGGTTTCTTCTGCACTAATAGAAAGGGTTGATGGCATGCTCCAAAATCTTGAGAA AGAAATTGATGACGTGGATGCCAAAATTGGTGATCATTGGCGAATACTCGACAGGGATTATGATGGGAAAGTTACTCCTGAGGAGGTGGCAGCTGCTGCG ATGTACTTGAAGGATACATTAGGCAAGGAAGGCATCCAAGAACTCATCAGCAATCTTTCCAAAGATAGAGATGGAAAGATTCTTGTGGAAGACATTGTCA AATTAGGCAGTTGGACGGAAGATGCCAAAGCAACTGAAGAGAGGGAGATGTAA
AA sequence Show only first row Show all	>Potri.007G142000.1 pacid=42765904 polypeptide=Potri.007G142000.1.p locus=Potri.007G142000 ID=Potri.007G142000.1.v4.1 annot-version=v4.1 MAARAIFIRNKLASYYFNPSSTRSLQSFQSIADALHSSDSRCFSCPASYHFNSDDRLRETVKKAECFGFSGVRNVGYCFNGSLVGPRFVDGRFRLGDGIL VRYASTVAVKRLPPEYDSDDEEGKEMVGKKRKEASADECDQAVEGLSSAKAKAKAKRLNESMKAEKSVLQRTWAALLGLGPALRAVASMSREDWAKKLVH WKHEIVSTLQHYWLGFKLLWADVRICSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPFAVFIIVPFMEFLLPVFLKLFPNMLPSTFQDKMKEQEALKR RLNARIEYAKFLQDTVKEMAKEVQNSRSGEIKKTAEDLDDFLNNVRRGSIVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPFGTDAYLRYMLR KRLQRIKNDDRLIQAEGVESLSEAELREDCRERGMLGLLSVEEMRQQLHDWLDLSLNHSVPSSLLILSRAFTVSGKLKPEEAVRATLSSLPDEVVDTVGV TALPSEDSVSERRRKLEYLEMQEEMIKEEEEDEEEERARMKESKVSEEDVALKEMTLSTAREAQEMARASTLEKQEHLCELSRALAVLASASSVSREREE FLGLVNKEIELYNSMVEKEGNDGEKEAVKAYRAAREETDRASEADERDEVSSALIERVDGMLQNLEKEIDDVDAKIGDHWRILDRDYDGKVTPEEVAAAA MYLKDTLGKEGIQELISNLSKDRDGKILVEDIVKLGSWTEDAKATEEREM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59820			LETM1-like protein (.1.2)		Potri.007G142000 [exp]	0	1
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Potri.013G125800 [exp]	8.42	0.8178
AT1G71850			Ubiquitin carboxyl-terminal hy...		Potri.013G115500 [exp]	9.21	0.8042
AT3G23370			RNA-binding (RRM/RBD/RNP motif...		Potri.010G070001 [exp]	10.09	0.8128
AT1G15420			unknown protein		Potri.001G173300 [exp]	12.48	0.7952
AT1G50920			Nucleolar GTP-binding protein ...		Potri.001G258900 [exp]	19.07	0.7624
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	19.23	0.8177
AT1G30960			GTP-binding family protein (.1...		Potri.001G160800 [exp]	22.22	0.7719	Pt-ERG.1
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	23.02	0.7876
AT4G19650			Mitochondrial transcription te...		Potri.012G118200 [exp]	26.83	0.7901
AT1G55040			zinc finger (Ran-binding) fami...		Potri.013G022300 [exp]	29.79	0.8051

Compare expression of checked genes

Potri.007G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.