Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43850 726 / 0 Integrin-linked protein kinase family (.1.2) AT2G31800 723 / 0 Integrin-linked protein kinase family (.1) AT3G59830 693 / 0 Integrin-linked protein kinase family (.1) AT3G58760 386 / 4e-130 Integrin-linked protein kinase family (.1) AT4G18950 382 / 1e-128 Integrin-linked protein kinase family (.1) AT1G14000 257 / 2e-80 VIK VH1-interacting kinase (.1) AT5G49470 167 / 4e-46 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT3G06640 163 / 2e-43 PAS domain-containing protein tyrosine kinase family protein (.1) AT4G35780 162 / 2e-43 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT3G06620 161 / 2e-42 PAS domain-containing protein tyrosine kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007800 [exp] 857 / 0 AT2G31800 751 / 0.0 Integrin-linked protein kinase family (.1) Potri.004G064400 [exp] 386 / 1e-130 AT4G18950 632 / 0.0 Integrin-linked protein kinase family (.1) Potri.002G158950 [exp] 268 / 3e-85 AT4G18950 305 / 1e-99 Integrin-linked protein kinase family (.1) Potri.010G164500 [exp] 263 / 1e-82 AT1G14000 757 / 0.0 VH1-interacting kinase (.1) Potri.008G090800 [exp] 253 / 5e-79 AT1G14000 743 / 0.0 VH1-interacting kinase (.1) Potri.017G123100 [exp] 207 / 4e-62 AT4G18950 235 / 5e-73 Integrin-linked protein kinase family (.1) Potri.008G105100 [exp] 164 / 1e-43 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.004G179100 [exp] 159 / 3e-43 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 157 / 5e-43 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008350 [exp] 724 / 0 AT2G31800 753 / 0.0 Integrin-linked protein kinase family (.1) Lus10027107 [exp] 686 / 0 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1) Lus10029277 [exp] 361 / 5e-120 AT4G18950 601 / 0.0 Integrin-linked protein kinase family (.1) Lus10030387 [exp] 268 / 6e-85 AT3G58760 315 / 2e-103 Integrin-linked protein kinase family (.1) Lus10037851 [exp] 258 / 6e-81 AT3G58760 305 / 2e-99 Integrin-linked protein kinase family (.1) Lus10030435 [exp] 250 / 7e-78 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10026626 [exp] 249 / 1e-77 AT1G14000 748 / 0.0 VH1-interacting kinase (.1) Lus10004066 [exp] 166 / 3e-46 AT1G14000 174 / 6e-50 VH1-interacting kinase (.1) Lus10023989 [exp] 160 / 1e-42 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10040540 [exp] 161 / 2e-42 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.007G142100.1 pacid=42766613 polypeptide=Potri.007G142100.1.p locus=Potri.007G142100 ID=Potri.007G142100.1.v4.1 annot-version=v4.1 ATGGAAGGACTTGCGAACCAACTAAAGCGAGGAATCTCACGTCAGTTTTCGACAGGATCATTGAAGTCACTTAGCAGGCAATTCTCACGACAATCTTCCC TCGATCCTAGGAGGAATAACTTGAGGTTTAGCTTTGGAAGACAGTCTTCTTTGGATCCAATACGGAGAAGTCCACTTCATGATCATGCACAGTTGAGTGT ACCGGAGAATCTGGATTCCACAATGCATTTGTTATTCATGGCGAGTAGAGGAGACGTTAAAGGAGTTGAAGATTTGTTGGATGAAGGTGTTGATGTTAAT AGTATCGATTTGGATGGAAGAACTGCTCTGCATATTGCAGCTTGTGAAGGTCATGTTGAAGTTGTTAAGCTTCTTTTGAGTCGCAGGGCTAATATCGATG CTCGTGATCGATGGGGCAGCACGGTGTGTGCCGATGCCAAGTATTATGGGAATGTTGAAGTTTATAACATTTTGAAGGCAAGAGGAGCTAAAGCCCCGAA AACCACCAGGAAGACACCTATGGCTGTGGCAAATCCTCGAGAAATTCCAGAGTATGAGCTTAACCCATTGGAACTTCAAGTCCGAAAAGCTGATGGCATT GCAAAGGGAATGTATCAAGTTGCTAAATGGAATGGTACTAAGGTTGCCGTGAAGATACTTGAAAAGGAACGATGTGCAGACCCTGAGAGCATAAATTCTT TCAAACATGAGCTAACCTTATTAGAAAAAGTTCGACATCCGAATTTGATTCAGTTTGTTGGAGCTGTGACCCAAAATTTTCCCTTGATGATTGTAGCAGA ATATCATTCAAAAGGTGACCTAGCAAGTTATCTTCAGAAGAAAGGGCGGTTTCCCCCATCTAAAGCTTTGAGACTTGCTCTTGATATTGCTAGGGGCATA AACTACCTACACGAATGCAAGCCATATCCGATCATCCATTGCGATTTAAAGCCAAGAAATATTTTGCTGGATGATGGTGGTCTATTGAAGGTAGCTGGAT TTGGTTTGATACGGTTGTCAAACATTTCACCTGACAAAGCCAAAGTAGCTCCAGGGACTATTATTGACCATTCAAATGTATACATGGCACCTGAGATTTA TAAAGATGAAATATTTGATAGAAGCGTCGATGCATACTCTTTTGGAGTCGTTTTGTATGAGATGCTTGAGGGAGTGCAGCCTTTCTATCCCAAGTCTCCT GGAGAGGCTGTGAAATTGATGTGCTTAGAAAACCAGAGACCACCATTTAAGATCAAATCAAGAAGCTACCCTCCAGATTTAAGAGAGTTGATTGATGAAT GTTGGCTTTCAGAACCTGGTGGTAGACCAACCTTTTCTGAGATCATCACAAGACTGGACAGAATCTGTTCCAACTGTTCAAAACAAGGATGGTTGAAAGA TACCTTTAAGCTTCCATGGAAAAACATGGAAGAAGACCGGAGATTTTCGTCGAAGAAATCAAGAGTTTCGGAGCTTCATATCACACATTGA
AA sequence Show only first row Show all	>Potri.007G142100.1 pacid=42766613 polypeptide=Potri.007G142100.1.p locus=Potri.007G142100 ID=Potri.007G142100.1.v4.1 annot-version=v4.1 MEGLANQLKRGISRQFSTGSLKSLSRQFSRQSSLDPRRNNLRFSFGRQSSLDPIRRSPLHDHAQLSVPENLDSTMHLLFMASRGDVKGVEDLLDEGVDVN SIDLDGRTALHIAACEGHVEVVKLLLSRRANIDARDRWGSTVCADAKYYGNVEVYNILKARGAKAPKTTRKTPMAVANPREIPEYELNPLELQVRKADGI AKGMYQVAKWNGTKVAVKILEKERCADPESINSFKHELTLLEKVRHPNLIQFVGAVTQNFPLMIVAEYHSKGDLASYLQKKGRFPPSKALRLALDIARGI NYLHECKPYPIIHCDLKPRNILLDDGGLLKVAGFGLIRLSNISPDKAKVAPGTIIDHSNVYMAPEIYKDEIFDRSVDAYSFGVVLYEMLEGVQPFYPKSP GEAVKLMCLENQRPPFKIKSRSYPPDLRELIDECWLSEPGGRPTFSEIITRLDRICSNCSKQGWLKDTFKLPWKNMEEDRRFSSKKSRVSELHITH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43850			Integrin-linked protein kinase...		Potri.007G142100 [exp]	0	1
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Potri.005G002100 [exp]	1.41	0.7444
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.004G174100 [exp]	1.73	0.7181	Pt-ERD7.1
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G121200 [exp]	6.63	0.7082	DREB64
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	7.87	0.7444
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141800 [exp]	11.83	0.5987
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.010G153100 [exp]	14.66	0.7044
AT4G12010			Disease resistance protein (TI...		Potri.013G097832 [exp]	14.69	0.6754
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Potri.002G098000 [exp]	15.55	0.6433
AT1G10020			Protein of unknown function (D...		Potri.001G288900 [exp]	17.00	0.6217
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Potri.001G218800 [exp]	24.24	0.6929

Compare expression of checked genes

Potri.007G142100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.