Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16990 491 / 8e-176 Zinc-binding dehydrogenase family protein (.1) AT3G03080 489 / 4e-175 Zinc-binding dehydrogenase family protein (.1) AT5G37980 486 / 1e-173 Zinc-binding dehydrogenase family protein (.1) AT1G26320 486 / 2e-173 Zinc-binding dehydrogenase family protein (.1.2) AT5G16970 484 / 5e-173 AT-AER alkenal reductase (.1) AT5G17000 480 / 2e-171 Zinc-binding dehydrogenase family protein (.1) AT5G37940 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) AT5G38000 467 / 6e-166 Zinc-binding dehydrogenase family protein (.1) AT5G16960 466 / 8e-166 Zinc-binding dehydrogenase family protein (.1) AT3G59845 430 / 9e-152 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143600 [exp] 503 / 1e-180 AT5G16970 501 / 1e-179 alkenal reductase (.1) Potri.017G002300 [exp] 502 / 5e-180 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 502 / 6e-180 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143800 [exp] 494 / 1e-176 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 493 / 2e-176 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.017G005700 [exp] 485 / 1e-172 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G006000 [exp] 481 / 1e-171 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G005400 [exp] 476 / 2e-169 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G002950 [exp] 444 / 6e-157 AT5G16970 464 / 7e-165 alkenal reductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010988 [exp] 490 / 2e-175 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 488 / 3e-174 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10040177 [exp] 486 / 9e-174 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 483 / 2e-172 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 481 / 2e-171 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 478 / 2e-170 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 470 / 3e-167 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 465 / 2e-165 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 388 / 2e-133 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 359 / 6e-125 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF16884 [poplar] [flax] ADH_N_2 N-terminal domain of oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.007G142400.1 pacid=42766011 polypeptide=Potri.007G142400.1.p locus=Potri.007G142400 ID=Potri.007G142400.1.v4.1 annot-version=v4.1 ATGTCTGATCAGGAAGTGAGCAACAAGCAAGTGGCTTTGAAAAACTATGTCACAGGGTTTCCAAAGGAGTCTGACATGCAAATTATTACAACTAATACTA TAAAACTTAGAGTACCAGAAGGGACTAAAGATGCAGTTCTTGTCAAGAATCTTTACCTGTCTTGTGATCCATATATGCGTGAACGCATGTCTGCTGGTGA TGGCGGTTTTTCCTCCTTCGAACTTGGAAAGCCTCTAACTGGATATGGAGTGGCTAAAATCTTGGATTCTACTCATCCTAACTACAAGAAAGGAGACTTA GCTTGGGGTTTTACTGGCTGGGAAGAGTACAGTCTCATTGTATCACCACGAATTTTGATCAAAATCGAGCACGCTGACGTGCCCCTATCATACTATACAG GAATTCTAGGTATGCCTGGTATGACTGCTTATGCTGGTTTTTATGAAATTTGCACTCCAAAGAAAGGAGAGTATGTTTACATATCTGCAGCATCTGGAGC TGTTGGCCAGATTGTTGGCCAATTTGCAAAATTGTCAGGTTGCTATGTTGTGGGTAGTGCCGGATCTAAAGAGAAGGTTGATCTGCTTAAGAACAAGTTT GGATTTGATGAGGCTTTCAACTACAAGGAAGAGCCAGACTTGACCGCAGCTCTTAAAAGGTATTTCCCTGAAGGCATTGATATTTACTTTGAGAATGTTG GGGGTAAAATGCTCGATGCGGTGTTAGCAAACATGAGGACCCTTGGTCGCATTGCTGCGTGTGGAATGATTTCTCAGTACAATCTCGAAAAGCATGAAGG TGTCCATAACTTGACGCTTATCGTGTGGAAACAAATTCGCATGCAGGGATTCCTAGCTGCTAGCTATTATCACCTCTATCCCAAGTTTCTGGAAATGGCT TTACCTTACATCAAGCAAGGGAAGATAGTATATGTGGAAGATAAAGCAGAAGGCCTTGAAAGTGGTCCAACATCTCTACTAAGCTTATTCACCGGCCAAA ATGTAGGAAAGAAGTTGCTAGTTGTTGCTCGTGAGTGA
AA sequence Show only first row Show all	>Potri.007G142400.1 pacid=42766011 polypeptide=Potri.007G142400.1.p locus=Potri.007G142400 ID=Potri.007G142400.1.v4.1 annot-version=v4.1 MSDQEVSNKQVALKNYVTGFPKESDMQIITTNTIKLRVPEGTKDAVLVKNLYLSCDPYMRERMSAGDGGFSSFELGKPLTGYGVAKILDSTHPNYKKGDL AWGFTGWEEYSLIVSPRILIKIEHADVPLSYYTGILGMPGMTAYAGFYEICTPKKGEYVYISAASGAVGQIVGQFAKLSGCYVVGSAGSKEKVDLLKNKF GFDEAFNYKEEPDLTAALKRYFPEGIDIYFENVGGKMLDAVLANMRTLGRIAACGMISQYNLEKHEGVHNLTLIVWKQIRMQGFLAASYYHLYPKFLEMA LPYIKQGKIVYVEDKAEGLESGPTSLLSLFTGQNVGKKLLVVARE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.007G142400 [exp]	0	1
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.010G143900 [exp]	6.40	0.8823
AT3G60070			Major facilitator superfamily ...		Potri.001G232100 [exp]	10.58	0.8690
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.006G267300 [exp]	18.27	0.8786
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	23.17	0.8716
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	37.94	0.8526
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	42.04	0.8460
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.003G201700 [exp]	49.59	0.7866
AT5G26940		DPD1	defective in pollen organelle ...		Potri.005G020600 [exp]	52.30	0.8425
					Potri.018G099301 [exp]	53.66	0.8408
AT5G61520			Major facilitator superfamily ...		Potri.004G233500 [exp]	59.32	0.8394

Compare expression of checked genes

Potri.007G142400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.