Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 535 / 7e-173 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 422 / 7e-130 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 392 / 7e-118 transmembrane receptors;ATP binding (.1.2) AT5G51630 362 / 5e-108 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G41750 357 / 2e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G18360 353 / 2e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 355 / 3e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 355 / 2e-106 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38340 350 / 1e-104 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 345 / 2e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143300 [exp] 1542 / 0 AT5G36930 519 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 1140 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 1110 / 0 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 1110 / 0 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 1097 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 1095 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 1095 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 1082 / 0 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 1072 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 527 / 2e-169 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 521 / 7e-168 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10018616 [exp] 523 / 8e-167 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 472 / 4e-149 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 448 / 5e-140 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 430 / 2e-134 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 428 / 7e-132 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 410 / 9e-126 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10004257 [exp] 410 / 7e-125 AT5G36930 446 / 7e-136 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10014207 [exp] 404 / 9e-124 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF05729 [poplar] [flax] NACHT NACHT domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.007G142600.2 pacid=42765133 polypeptide=Potri.007G142600.2.p locus=Potri.007G142600 ID=Potri.007G142600.2.v4.1 annot-version=v4.1 ATGACAGAGCCAGATTCTTCTCGATCTAGACCACAAGGGGCCTATGATGTCTTTTTGAGTTTTAGAGGAGAAGATACTCGCAAGACATTTACAGATCATC TATATACTGCCTTAGTCCAAGCAGGAATCCAAACTTTTCGAGATGATGATGAACTTCCTAGAGGAAAAGAAATCTCCCAACATCTCCTCGAGGCAATTCA AGAATCAAAGATATCTATAGTGGTCTTCTCAAAAGGATATGCTTCTAGATGGTGTCTTGATGAACTTGTGGAGATTATAAAGTGTAAATATAGGAAAACT GGTCACATTGCTCTTCCTATATTCTATGACATTGATCCTTCAGATGTGAGAAAACAGACTGGCAGTTTTGCAGAAGCATTTGTTAAGCATGAAGAACGTT CTAAAGAGAAGGTGAAGGAGTGGAGAGAAGCTCTTGAAGAGGCAGGAAATCTATCTGGTTGGAATCTCAAAGATATGGCAAATGGGCATGAAGCAAAATT TATCCAAGAGATTATCAAGGATGTGCTGACTAAATTGGACCCCAAGTACTTGCATGTTCCTAAGCACCTAGTAGGTATTGATCCGCTTGCTCACAATATT TTTCACTTCCTAAGTACTGCAACAGATGATGTACGCATTGTGGGCTTACATGGGATGCCAGGAATAGGAAAGACGACTATAGCAAAAGTTGTATTTAATC AACTCTGCTATGACTGTGGATATGGATTCGAGGGAATCTCTTTTCTTTTGAATGTCAAAGAAAAATCAGAACCTAATGATTTGGTTCTTCTACAACAACA ACTACTTCATGATATTTTAAGACAAAATACTGAGAAGATCAATAATGTTGATAGAGGAAAGGTTCTGATTAAAGAACGACTGCGGCACAAAAGAGTTCTT GTTGTTTTTGATGATGTGGATCGTCCAGACCGACTACTTGATTTGATGGGAGAGCCAAGGTGGTTAGGCCCTGAAAGTAGGGTGATAATTACAACTACAG ATGAAAGCTTACTTCTTGAAGCTGATCAAAGATACCAGGTTCAAGAATTGAACCGGGGTGACTCCCTTCAGCTTTTCTGTAGGCATGCGTTTAGGGACAC CAAGCCAGCAAAAGATTATGTTGAGCTTTCGAATGATGTAGTTGAATACTGTGGAGGACTTCCTTTAGCTCTTAAGGTTTTAGGTTCTTGTTTGTATGGG AAAAACCAAGCTAGATGGGAATCTGTAATTGACAGATTGAGAAAATTTCCAAACAGTGAAATTCAGAAAAAACTTAGAATAAGTTTTGACACACTGGATG AATCTACACTAAAGAATACATTTCTTGATATTGCATGCTTCTTTATTGGTAGAAAGAAAGAATACGTAGCAAAAGTGCTAGAAGGACGTTATGGTTACAA TCCAGAAGATGATTTCGGAACTCTCATTGAACGGTCTCTGATTAAAGTTGATGATTCTGGAACGATAGACATGCATGATCTATTACGAGGGATGGGAAGG GAGATCGTTAAGGAAGAGTCACCTGAAAATCCTGCGCAAAGGAGCAGAATTTGGAGTCAAGAGGATGCGTGGATAGTACTCAAGATGCAGATGGGAACAG AAGTTGTAAAGGGCCTTACACTGGATGTGAGAAGATCAGAAGACAAATCACTAAGCACTGGATCATTTACAAAAATGAAAAATTTAAAATTACTCCAAAT CGATGGAGCAGAACTCACCGGATCTTTCGAACGGCTTTCTAAAGTGTTGACGTGGATTTGTTGGCTTGAATGTCCTTTGGAATTTTTACCATCCGACTTT TCACTGGACTACGTAGTTGTTATTGATATGCAGTACAGTAACATCAGAGAATTATGGAAGAAAAAAAAGATGTTCAACAATCTAAAAATTCTTGATCTCA GTTATTCAAAGAACCTTGTTAAAACACCAAACTTGTACAGTTCAAGTCTAGAGAAATTACTGCTTGAAGGTTGCTCAAGTTTAGTTGAGGTACATCAATC TATTGGACATTCAAAGTCTCTTGTATGTTTGAACATTTGGGGGTGTTCACAACTTAAGGAGCTGCCGGAGTGCATGGGTGATATTGAGTCCTTCACTGAG CTTCTAGCAGATGGAATTAACAACGAGCAATTTCTCTCTTCAGTTGGACATTTAAAGTGTGTGAGGAAGTTGTCATTGCGCGGACACTGGAAGGGGGACT GGAACTTACCATATCGGCCTTCACCAAATTCTTCTTGGATTTCAGCTTTTCGGATAACTCCAACTTCCATTATTTGGAGAGTTTTGGGAAAGCTAAAACT TGATGGTTATGGTTTGTCTGAACGCGCAACTAATTGTGTTGATTTTGGAGGTTTGTCCGCTCTTGAAGAGTTGGATCTATCTAGAAACGAGTTCTTCAGT CTGCCTTCTGGCATCGGCATCCTTTCTAAGCTGCGGCTTTTGACCGTTCAGGAATGCGGAAATCTTGTATCAATCCCAGAGCTTCCCTCAAATTTAGAAA ATTTGGATACATTTGGTTGCAAATCAATGCAATGGGTAAGACTACCAATCCAAGCAAAAAAATATCTAAGTCTGTTTCTGATTGGTTGTCCGGATTTAAT GGAGATTGAAGGCATGGAAGGTCTAAGTAATCATGGCTGGTTTATTTCCTATATTACCAAGAACAAGTTATCAAATAATTATAAGAAAAGTCTTGCTGAG GCACTGTGCTACGGTGGTTACGCGTATCATATGTTCTTCAATCGTTGGCATACATTCAGCCACAGAGATAAGTTCACTATGATTCCAAATTGGTTCAGCT ACTGA
AA sequence Show only first row Show all	>Potri.007G142600.2 pacid=42765133 polypeptide=Potri.007G142600.2.p locus=Potri.007G142600 ID=Potri.007G142600.2.v4.1 annot-version=v4.1 MTEPDSSRSRPQGAYDVFLSFRGEDTRKTFTDHLYTALVQAGIQTFRDDDELPRGKEISQHLLEAIQESKISIVVFSKGYASRWCLDELVEIIKCKYRKT GHIALPIFYDIDPSDVRKQTGSFAEAFVKHEERSKEKVKEWREALEEAGNLSGWNLKDMANGHEAKFIQEIIKDVLTKLDPKYLHVPKHLVGIDPLAHNI FHFLSTATDDVRIVGLHGMPGIGKTTIAKVVFNQLCYDCGYGFEGISFLLNVKEKSEPNDLVLLQQQLLHDILRQNTEKINNVDRGKVLIKERLRHKRVL VVFDDVDRPDRLLDLMGEPRWLGPESRVIITTTDESLLLEADQRYQVQELNRGDSLQLFCRHAFRDTKPAKDYVELSNDVVEYCGGLPLALKVLGSCLYG KNQARWESVIDRLRKFPNSEIQKKLRISFDTLDESTLKNTFLDIACFFIGRKKEYVAKVLEGRYGYNPEDDFGTLIERSLIKVDDSGTIDMHDLLRGMGR EIVKEESPENPAQRSRIWSQEDAWIVLKMQMGTEVVKGLTLDVRRSEDKSLSTGSFTKMKNLKLLQIDGAELTGSFERLSKVLTWICWLECPLEFLPSDF SLDYVVVIDMQYSNIRELWKKKKMFNNLKILDLSYSKNLVKTPNLYSSSLEKLLLEGCSSLVEVHQSIGHSKSLVCLNIWGCSQLKELPECMGDIESFTE LLADGINNEQFLSSVGHLKCVRKLSLRGHWKGDWNLPYRPSPNSSWISAFRITPTSIIWRVLGKLKLDGYGLSERATNCVDFGGLSALEELDLSRNEFFS LPSGIGILSKLRLLTVQECGNLVSIPELPSNLENLDTFGCKSMQWVRLPIQAKKYLSLFLIGCPDLMEIEGMEGLSNHGWFISYITKNKLSNNYKKSLAE ALCYGGYAYHMFFNRWHTFSHRDKFTMIPNWFSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.007G142600 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.007G143200 [exp]	1.00	0.9912
AT5G36930			Disease resistance protein (TI...		Potri.007G143100 [exp]	4.58	0.9723
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020102 [exp]	5.91	0.9755
AT5G36930			Disease resistance protein (TI...		Potri.013G096923 [exp]	8.30	0.9560
AT5G36930			Disease resistance protein (TI...		Potri.011G015050 [exp]	10.95	0.9588
AT5G36930			Disease resistance protein (TI...		Potri.011G014301 [exp]	10.95	0.9626
AT5G17680			disease resistance protein (TI...		Potri.019G070001 [exp]	12.48	0.9626
AT5G52960			unknown protein		Potri.016G123100 [exp]	12.96	0.9587
AT1G66200		ATGSR2, GLN1;2	glutamine synthetase 1;2, glut...		Potri.017G138201 [exp]	17.20	0.9707
AT5G17680			disease resistance protein (TI...		Potri.019G070651 [exp]	21.44	0.9434

Compare expression of checked genes

Potri.007G142600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.