Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16970 501 / 1e-179 AT-AER alkenal reductase (.1) AT3G03080 500 / 4e-179 Zinc-binding dehydrogenase family protein (.1) AT1G26320 495 / 4e-177 Zinc-binding dehydrogenase family protein (.1.2) AT5G17000 494 / 5e-177 Zinc-binding dehydrogenase family protein (.1) AT5G16990 494 / 6e-177 Zinc-binding dehydrogenase family protein (.1) AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) AT5G37940 482 / 5e-172 Zinc-binding dehydrogenase family protein (.1) AT5G38000 478 / 3e-170 Zinc-binding dehydrogenase family protein (.1) AT5G16960 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) AT3G59845 430 / 2e-151 Zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G143800 [exp] 533 / 0 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002700 [exp] 519 / 0 AT1G26320 490 / 4e-175 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G002300 [exp] 513 / 0 AT1G26320 488 / 2e-174 Zinc-binding dehydrogenase family protein (.1.2) Potri.007G143700 [exp] 508 / 0 AT5G16970 495 / 2e-177 alkenal reductase (.1) Potri.007G142400 [exp] 503 / 1e-180 AT5G16990 491 / 1e-175 Zinc-binding dehydrogenase family protein (.1) Potri.017G005700 [exp] 498 / 8e-178 AT1G26320 496 / 1e-176 Zinc-binding dehydrogenase family protein (.1.2) Potri.017G005400 [exp] 495 / 5e-177 AT5G37980 488 / 3e-174 Zinc-binding dehydrogenase family protein (.1) Potri.017G006000 [exp] 491 / 2e-175 AT5G37980 493 / 2e-176 Zinc-binding dehydrogenase family protein (.1) Potri.017G002950 [exp] 482 / 6e-172 AT5G16970 464 / 7e-165 alkenal reductase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040177 [exp] 474 / 6e-169 AT5G37980 480 / 3e-171 Zinc-binding dehydrogenase family protein (.1) Lus10010988 [exp] 474 / 9e-169 AT5G16990 486 / 6e-174 Zinc-binding dehydrogenase family protein (.1) Lus10004380 [exp] 470 / 2e-167 AT5G37980 477 / 4e-170 Zinc-binding dehydrogenase family protein (.1) Lus10010989 [exp] 470 / 3e-167 AT5G16990 483 / 2e-172 Zinc-binding dehydrogenase family protein (.1) Lus10004379 [exp] 469 / 1e-166 AT5G17000 487 / 4e-174 Zinc-binding dehydrogenase family protein (.1) Lus10036289 [exp] 461 / 1e-163 AT5G16990 463 / 1e-164 Zinc-binding dehydrogenase family protein (.1) Lus10007853 [exp] 456 / 1e-161 AT5G16990 468 / 3e-166 Zinc-binding dehydrogenase family protein (.1) Lus10007832 [exp] 452 / 4e-160 AT5G16990 464 / 3e-165 Zinc-binding dehydrogenase family protein (.1) Lus10040589 [exp] 364 / 5e-124 AT1G65560 446 / 3e-156 Zinc-binding dehydrogenase family protein (.1) Lus10003638 [exp] 343 / 2e-118 AT3G03080 356 / 8e-124 Zinc-binding dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF16884 [poplar] [flax] ADH_N_2 N-terminal domain of oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.007G143600.1 pacid=42766133 polypeptide=Potri.007G143600.1.p locus=Potri.007G143600 ID=Potri.007G143600.1.v4.1 annot-version=v4.1 ATGGCAGGTAGAGGTGAAACAGTGAGCAACAAGCATGTGTTATTCAAGAACTATGTGTCTGGTTTCCCCAAAGAATCAGACATGTATGTTGCCACTACTA CCACTGAACTCAAAGTACCAGATGGTTGTAATAATGGGGTTCTTGTTAAGAATCTCTATCTTTCTTGTGACCCGTATATGATAATTTTGATGAAGAAGTC CATAGACCAAAGGACTTTCACTTCGTATACCCCAGGCTCTCCATTACGTGGGTATGGAGTGGCGAAAGTGTTGGATTCTAGGCACCCGGGCTTTAAAGAA GGCGACTTTGTTTGGGGGACAGTAGGCTGGGAAGAGTACAGCCTTATCACTTCATTCCAACCCTTCTTTAAAATTCAGGATACTGATGTGCCCCTTTCAT ACTATACAGGAATTCTTGGCATGCCTGGTATGACTGCTTATTTTGGTTTCTATCAAGTTTGTTCTCCAAAGAAAGGGGAGCACGTCTACATTTCAGCAGC TTCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTAATGGGTTGTTATGTTGTTGGAAGTGCCGGAAGTAAAGAAAAGGTTGATTTATTGAAG AACAAATTTGGGTTTGACGAAGCTTTTAATTACAAAGAGGAGCCTGACTTAAATGCTGCTCTGGGAAGATACTTCCCTGAAGGCATTGACATATATTTTG AAAATGTTGGGGGCAAGATGCTTGACGCCGTGCTTCCAAACATGAGATTTCGTGGCCGCATTGCGGTATGTGGAATGATCTCCCAATACAATCTTGACAA ACCTGAAGGTGTATTTAATTTAATGACTGTCGTTTACAAGCGGGTACGCATAGAAGGATTTGTGGTTACAGATTATTATGATCAATATCCCAAGTTCCTA GACTTTGTATTGCCTTGCATAAGAGAGGGAAAGATAAAGTACATGGAAGACATTTCTGAAGGACTCGAGAATGGCCCTGCAGCACTGGTAGGCCTTTTCA GTGGACAAAATGTTGGGAAAAAGCTGGTTGTAGTTGCTCGTGAGTGA
AA sequence Show only first row Show all	>Potri.007G143600.1 pacid=42766133 polypeptide=Potri.007G143600.1.p locus=Potri.007G143600 ID=Potri.007G143600.1.v4.1 annot-version=v4.1 MAGRGETVSNKHVLFKNYVSGFPKESDMYVATTTTELKVPDGCNNGVLVKNLYLSCDPYMIILMKKSIDQRTFTSYTPGSPLRGYGVAKVLDSRHPGFKE GDFVWGTVGWEEYSLITSFQPFFKIQDTDVPLSYYTGILGMPGMTAYFGFYQVCSPKKGEHVYISAASGAVGQLVGQFAKLMGCYVVGSAGSKEKVDLLK NKFGFDEAFNYKEEPDLNAALGRYFPEGIDIYFENVGGKMLDAVLPNMRFRGRIAVCGMISQYNLDKPEGVFNLMTVVYKRVRIEGFVVTDYYDQYPKFL DFVLPCIREGKIKYMEDISEGLENGPAALVGLFSGQNVGKKLVVVARE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16970		AT-AER	alkenal reductase (.1)		Potri.007G143600 [exp]	0	1
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.013G026100 [exp]	1.41	0.8778	SAG13.4
AT1G31812		ACBP6, ACBP	acyl-CoA-binding protein 6 (.1...		Potri.003G103700 [exp]	1.73	0.8767
AT5G66450			Phosphatidic acid phosphatase ...		Potri.007G021600 [exp]	8.83	0.8707
AT2G25100			Polynucleotidyl transferase, r...		Potri.008G019800 [exp]	9.79	0.8377
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	13.41	0.8387
AT5G39790			5'-AMP-activated protein kinas...		Potri.017G125400 [exp]	17.46	0.8235
AT4G32590			2Fe-2S ferredoxin-like superfa...		Potri.006G247300 [exp]	20.78	0.8661
AT5G67150			HXXXD-type acyl-transferase fa...		Potri.003G057001 [exp]	22.58	0.8661
AT3G05170			Phosphoglycerate mutase family...		Potri.003G131200 [exp]	22.97	0.8508
AT4G27070		TSB2	tryptophan synthase beta-subun...		Potri.001G420300 [exp]	37.60	0.8530

Compare expression of checked genes

Potri.007G143600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.