Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59850 493 / 3e-175 Pectin lyase-like superfamily protein (.1) AT2G43870 491 / 3e-174 Pectin lyase-like superfamily protein (.1) AT2G43890 421 / 2e-146 Pectin lyase-like superfamily protein (.1) AT2G43860 414 / 1e-143 Pectin lyase-like superfamily protein (.1) AT1G05650 402 / 4e-139 Pectin lyase-like superfamily protein (.1) AT1G05660 401 / 1e-138 Pectin lyase-like superfamily protein (.1) AT1G65570 388 / 2e-133 Pectin lyase-like superfamily protein (.1) AT2G43880 387 / 4e-133 Pectin lyase-like superfamily protein (.1) AT3G07970 279 / 3e-90 QRT2 QUARTET 2, Pectin lyase-like superfamily protein (.1) AT1G17150 278 / 3e-90 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G144100 [exp] 562 / 0 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 561 / 0 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 535 / 0 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 529 / 0 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 528 / 0 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 526 / 0 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 524 / 0 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.017G003500 [exp] 523 / 0 AT3G59850 498 / 4e-177 Pectin lyase-like superfamily protein (.1) Potri.017G005300 [exp] 516 / 0 AT3G59850 504 / 3e-179 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011419 [exp] 514 / 0 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 510 / 0 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 506 / 6e-180 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 486 / 6e-172 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 484 / 3e-171 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 454 / 1e-159 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 437 / 1e-152 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 390 / 5e-134 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 387 / 1e-132 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 383 / 3e-131 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.007G144500.1 pacid=42765459 polypeptide=Potri.007G144500.1.p locus=Potri.007G144500 ID=Potri.007G144500.1.v4.1 annot-version=v4.1 ATGGACAGTTCTACAAGTTATTTTGTTCTTGCATTTGCGTTTTTTTTCCTTACCTCATCAGCTTCTTTAACAGCAAGTGGAGGAAAACACAACGTGTTGG ATTATGGAGCCAAACCTGATGGAAGAACGGACTCAAGTAAGGCGTTTCTTGCTACATGGGAACAAGCATGTCGCTCTACAAAACCTACCACCATATATGT GCCACCAAGTAAATTCTTGCTCCCCAAAGTTGCTTTTCGTGGCCCTTGCAAGAATAATGCTACTTCGATACGCATCGATGGCACACTTGTTGCTCCATCT GATTATCGTGTCCTTGGTGAACAATGGATTTTCTTTGAAAATGTTAATGGGGTTTCGATTTTTGGAGGGATTCTTGATGGTCGAGGCATTGGCTTGTGGA CTTGTAAGAATAGTAGCAAGAATTGCCCCACTGGAGCTACGTCACTCGGATTTACCAAATCGAAAAATATAGTGATAATGGGATTGACATCCCTGAACAG TCAGATGTTTCATATAGTCATCAATGGCTGCCAAAAAGTAAGAATGCAAGGACTTAGAATTTCTGCCTCTTACAGAAGCCCAAACACAGACGGTATTCAT GTGCAATTATCAGATGGTGTCACTATATTGAACACAAAAATAAAAACAGGTGATGATTGTGTATCAATCGGTGCCGGTACAACTGATTTACGGATTGAAA ATGTTGTGTGTGGACCTGGCCATGGAATAAGCATTGGGAGTCTAGGCAAGGATCTTGAAGAGCCTGGTGTGCAAAATGTGACGGTTAAAAACGTTACACT AACGGACAGCCAGAATGGTTTAAGAATAAAGTCTTGGGGGAGACCTAGTAATGGTTTTGCTAAGGACATTCTTTTCCAACATGTTGTGATGACCAATGTC CAAAATCCAATTGTCATCGATCAGAATTACTGCCCTGACAATAAAGACTGCCCTGGTCAGGCTTCTGGCATTAAAATTAGCAATGTGACGTACAAGGACA TCCATGGAACATCGGCAACGCAAGTTGCTGTGAAATTTGATTGTAGCAAGAAGCATCCATGCACTGGGATTCGCTTGGAAGATGTAAAACTCACTTATAG AAATCGACTAGCTTATGCATCGTGTAGAAATGTTGATGGAACTGCTTCTGGTTCTTCAGTCCAGCCTCAAAGTTGTTTGTAG
AA sequence Show only first row Show all	>Potri.007G144500.1 pacid=42765459 polypeptide=Potri.007G144500.1.p locus=Potri.007G144500 ID=Potri.007G144500.1.v4.1 annot-version=v4.1 MDSSTSYFVLAFAFFFLTSSASLTASGGKHNVLDYGAKPDGRTDSSKAFLATWEQACRSTKPTTIYVPPSKFLLPKVAFRGPCKNNATSIRIDGTLVAPS DYRVLGEQWIFFENVNGVSIFGGILDGRGIGLWTCKNSSKNCPTGATSLGFTKSKNIVIMGLTSLNSQMFHIVINGCQKVRMQGLRISASYRSPNTDGIH VQLSDGVTILNTKIKTGDDCVSIGAGTTDLRIENVVCGPGHGISIGSLGKDLEEPGVQNVTVKNVTLTDSQNGLRIKSWGRPSNGFAKDILFQHVVMTNV QNPIVIDQNYCPDNKDCPGQASGIKISNVTYKDIHGTSATQVAVKFDCSKKHPCTGIRLEDVKLTYRNRLAYASCRNVDGTASGSSVQPQSCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59850			Pectin lyase-like superfamily ...		Potri.007G144500 [exp]	0	1
					Potri.008G053150 [exp]	16.58	0.7735
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.006G236100 [exp]	22.24	0.7735
AT3G19920			unknown protein		Potri.007G073600 [exp]	23.45	0.7735
AT4G33880	bHLH	RSL2, bHLH085	ROOT HAIR DEFECTIVE 6-LIKE 2 (...		Potri.002G119200 [exp]	24.67	0.7324
AT1G30870			Peroxidase superfamily protein...		Potri.003G156100 [exp]	26.32	0.7066
					Potri.006G017750 [exp]	32.12	0.7723
					Potri.014G042550 [exp]	34.92	0.6639
AT3G19430			late embryogenesis abundant pr...		Potri.009G097400 [exp]	40.79	0.7451
AT1G66920			Protein kinase superfamily pro...		Potri.012G003301 [exp]	50.19	0.6932
AT3G51020			unknown protein		Potri.002G011500 [exp]	51.84	0.6873

Compare expression of checked genes

Potri.007G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.