Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05620 524 / 0 NSH2, URH2 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) AT2G36310 315 / 6e-107 NSH1, URH1 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) AT5G18860 50 / 1e-06 NSH3 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18870 47 / 6e-06 NSH5 nucleoside hydrolase 5, Inosine-uridine preferring nucleoside hydrolase family protein (.1) AT5G18890 47 / 9e-06 NSH4 nucleoside hydrolase 4, Inosine-uridine preferring nucleoside hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G083400 [exp] 324 / 3e-110 AT2G36310 534 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Potri.008G197500 [exp] 59 / 2e-09 AT5G18860 1106 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Potri.008G197400 [exp] 54 / 1e-07 AT5G18860 1196 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042608 [exp] 563 / 0 AT1G05620 521 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10022062 [exp] 546 / 0 AT1G05620 506 / 0.0 nucleoside hydrolase 2, uridine-ribohydrolase 2 (.1.2) Lus10003251 [exp] 344 / 3e-118 AT2G36310 540 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10035601 [exp] 340 / 3e-108 AT2G36310 536 / 0.0 nucleoside hydrolase 1, uridine-ribohydrolase 1 (.1) Lus10041249 [exp] 53 / 2e-07 AT5G18860 639 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10033998 [exp] 49 / 2e-06 AT5G18860 899 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1) Lus10012778 [exp] 46 / 3e-05 AT5G18860 1091 / 0.0 nucleoside hydrolase 3, inosine-uridine preferring nucleoside hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01156 [poplar] [flax] IU_nuc_hydro Inosine-uridine preferring nucleoside hydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G144600.2 pacid=42765498 polypeptide=Potri.007G144600.2.p locus=Potri.007G144600 ID=Potri.007G144600.2.v4.1 annot-version=v4.1 ATGGCAGCAGAACCAAAGAAGATCATCATAGACACTGACCCTGGCATTGATGACGCCATGGCAATCTTTCTTGCTTTGAGATCACCTGAAGTTGAGGTGA TTGGGCTTACTACTATATATGGGAATGTTTATACCACTTTAGCCACCAGGAATGCCTTGCATTTGTTGGAGGTTGCAGGGAGGACTGATATTCCAGTTGC CGAGGGATCTCATGTCACAATAACTAAAGGTACAAAACTTCGGATTGCAGATTTTGTCCATGGTGCTGATGGACTTGGCAACCAGAATTTTGACCCACCT AAAGGAAAGCCAGTTGAACAGTCAGCGGCTGCTTTTCTGGTTGAGCAAGCAAAACTTCACCCTGGAAAAGTCACTGTGGTGGCATTGGGTCCACTTACAA ATATTGCTCTGGCTATTGAATTAGATCCTGAGTTTTGCAAAAATATCGGGCAGATTGTTCTTCTTGGTGGAGCATTTTCAGTAAACGGGAATGTAAATCC AGCAGCTGAGGCAAATATATTTGGCGATCCTGATGCTGCTGATATTGTTTTCACCTGTGGAGCAGATATTTTGGCTGTGGGGATAAATGTTACCCATCAA GTTGTTCTCACAGATGCTGAGCGAGACAAATTGATACAGTCAAATGGAAAATTTGCTCAGTACCTGTGCAAAATTTTAGAGGTGTACTTCTCTTATCATC AAGAAGCATACAGCATGAGAGGAGTGTATCTTCATGATCCAACAGCACTCCTTGCAGCCGTGAATCCTTCACTTCTCACTTACACAGAAGGTGCTGTTAG AGTCCAGACAACTGGCATCACAAGGGGACTAACATTATTATATGACAAACAGAAAAGGTTTGGAGAAGTGACTGAATGGACTGATAAACCCACAGTTAAG GTGGCCGTGACGGTTGATGCTCCCACTGTTGTCAAGTTGTTGATGGAAAGGCTTATGGAATCATAA
AA sequence Show only first row Show all	>Potri.007G144600.2 pacid=42765498 polypeptide=Potri.007G144600.2.p locus=Potri.007G144600 ID=Potri.007G144600.2.v4.1 annot-version=v4.1 MAAEPKKIIIDTDPGIDDAMAIFLALRSPEVEVIGLTTIYGNVYTTLATRNALHLLEVAGRTDIPVAEGSHVTITKGTKLRIADFVHGADGLGNQNFDPP KGKPVEQSAAAFLVEQAKLHPGKVTVVALGPLTNIALAIELDPEFCKNIGQIVLLGGAFSVNGNVNPAAEANIFGDPDAADIVFTCGADILAVGINVTHQ VVLTDAERDKLIQSNGKFAQYLCKILEVYFSYHQEAYSMRGVYLHDPTALLAAVNPSLLTYTEGAVRVQTTGITRGLTLLYDKQKRFGEVTEWTDKPTVK VAVTVDAPTVVKLLMERLMES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Potri.007G144600 [exp]	0	1
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	1.00	0.8813
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	3.46	0.8379
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.019G111200 [exp]	3.87	0.8382	Pt-ATHM1.3
AT2G42780			unknown protein		Potri.012G059000 [exp]	5.65	0.8134
AT1G17200			Uncharacterised protein family...		Potri.001G436400 [exp]	12.16	0.8101
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	13.19	0.7954
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	16.70	0.7810
					Potri.017G113750 [exp]	20.19	0.8575
AT4G24130			Protein of unknown function, D...		Potri.001G084200 [exp]	28.61	0.8429
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.019G036000 [exp]	32.49	0.8386	TUA8,TUA1.1

Compare expression of checked genes

Potri.007G144600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.