Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43980 145 / 1e-41 ATITPK4 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) AT5G16760 43 / 3e-05 AtITPK1 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007500 [exp] 203 / 9e-64 AT2G43980 534 / 0.0 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Potri.001G140000 [exp] 49 / 2e-07 AT5G16760 372 / 6e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1) Potri.003G094100 [exp] 48 / 9e-07 AT5G16760 373 / 2e-129 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006145 [exp] 146 / 3e-43 AT2G43980 317 / 1e-105 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10033768 [exp] 140 / 2e-40 AT2G43980 395 / 4e-135 "inositol 1,3,4-trisphosphate 5/6-kinase 4", inositol 1,3,4-trisphosphate 5/6-kinase 4 (.1) Lus10035811 [exp] 46 / 4e-06 AT5G16760 311 / 1e-105 inositol \(1,3,4\) P3 5/6-kinase 1, Arabidopsis thaliana inositol \(1,3,4\) P3 5/6-kinase 1, Inositol 1,3,4-trisphosphate 5/6-kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0179 [poplar] [flax] ATP-grasp PF05770 [poplar] [flax] Ins134_P3_kin Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Potri.007G144701.6 pacid=42765769 polypeptide=Potri.007G144701.6.p locus=Potri.007G144701 ID=Potri.007G144701.6.v4.1 annot-version=v4.1 ATGGCAATCATCTGTGGAGTTGAAGATTTTAAAGATTTAAATATTCCTCTTCCAGCAATTGTTCAGGAGTACGTGGACCATTTATCTAATATATTCAAGA TTTATGTCTTGGGTGAGCGACTTTTCTATGCGGTAAAAAAATCTATACCAAATGTTAATGTCTTGACCAAATCATCTGAAAGAAATGAACTCGGACCTTT ACTCTTTGACAGCTTAAAATCTCTACCCATCAGTACTGAGCACTATACAGATGCAGATTCCTTCAAGACCAATATTCATTCTTTTGATCTTGAGCTGGTC ACTGATGCTGTGAATTGGCTTGCAAGAAAACTTGATCTTACCATCTTTGGCTTCGATGCAGTTGCAATAGATTGGCATCCACCATTCCTACTGGATCCAA TTTTGCTAGGTGTCCATGTTCTTGATATTCCTGTTGTTTGGTCCCTCGAGTCTATTCTCTTCGGTTACATCTTTTTCCGGGCTGCATCATGA
AA sequence Show only first row Show all	>Potri.007G144701.6 pacid=42765769 polypeptide=Potri.007G144701.6.p locus=Potri.007G144701 ID=Potri.007G144701.6.v4.1 annot-version=v4.1 MAIICGVEDFKDLNIPLPAIVQEYVDHLSNIFKIYVLGERLFYAVKKSIPNVNVLTKSSERNELGPLLFDSLKSLPISTEHYTDADSFKTNIHSFDLELV TDAVNWLARKLDLTIFGFDAVAIDWHPPFLLDPILLGVHVLDIPVVWSLESILFGYIFFRAAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Potri.007G144701 [exp]	0	1
					Potri.002G169550 [exp]	4.24	0.8156
					Potri.008G164600 [exp]	4.69	0.8211
AT2G21385			unknown protein		Potri.009G121902 [exp]	8.12	0.7690
AT3G50860			Clathrin adaptor complex small...		Potri.005G122900 [exp]	10.48	0.7978
AT2G01690			ARM repeat superfamily protein...		Potri.010G106700 [exp]	10.67	0.7207
AT3G13410			unknown protein		Potri.003G223601 [exp]	11.48	0.8020
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.008G050300 [exp]	12.68	0.7074
AT2G01050			zinc ion binding;nucleic acid ...		Potri.017G002800 [exp]	15.36	0.5914
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.010G140500 [exp]	16.24	0.6990
					Potri.001G258150 [exp]	18.70	0.6962

Compare expression of checked genes

Potri.007G144701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.