Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43970 356 / 3e-117 RNA-binding protein (.1.2) AT3G19090 219 / 2e-65 RNA-binding protein (.1) AT5G46250 182 / 9e-52 RNA-binding protein (.1.2.3) AT4G32720 76 / 1e-14 ATLA1 La protein 1 (.1.2) AT1G79880 65 / 6e-11 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT4G35890 57 / 2e-08 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 54 / 1e-07 winged-helix DNA-binding transcription factor family protein (.1) AT5G21160 52 / 7e-07 LA RNA-binding protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G007400 [exp] 493 / 1e-171 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.004G144700 [exp] 241 / 3e-74 AT3G19090 363 / 3e-122 RNA-binding protein (.1) Potri.009G106500 [exp] 234 / 1e-71 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.011G080700 [exp] 171 / 3e-48 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.006G241800 [exp] 67 / 1e-11 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.018G037900 [exp] 66 / 2e-11 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.005G243600 [exp] 62 / 5e-10 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.001G220100 [exp] 56 / 6e-08 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.005G109400 [exp] 55 / 1e-07 AT4G35890 178 / 2e-49 winged-helix DNA-binding transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025608 [exp] 390 / 2e-130 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10027080 [exp] 384 / 8e-128 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10012058 [exp] 225 / 2e-67 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 193 / 7e-57 AT3G19090 291 / 8e-96 RNA-binding protein (.1) Lus10023315 [exp] 182 / 3e-52 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10038494 [exp] 176 / 3e-50 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10038624 [exp] 71 / 8e-13 AT4G32720 360 / 3e-121 La protein 1 (.1.2) Lus10022135 [exp] 70 / 2e-12 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10011685 [exp] 70 / 2e-12 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10014254 [exp] 62 / 7e-10 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.007G144800.1 pacid=42765499 polypeptide=Potri.007G144800.1.p locus=Potri.007G144800 ID=Potri.007G144800.1.v4.1 annot-version=v4.1 ATGGCACAACAAAATCAAGAAGAAGAAGAAGAAGAAGTGGTAGCGATAGTAGAATCTGTACCTGAATCCCTAGATCAATCCTCTTCTTCTTCTTCTTCTG GTCCTTCGCTTTCTCGTAACGTGTCCTTCAGTAAACTCAACGCGCAAGCTCCAGCCTTTGTCCCCACGCGCCCCCAATCTCAGCCTCAACCTCCACCACG AATGACCGTGATCCCTCCTCCTCCGCCTCCTCCCGCCGCTATGATGCATATGTATCCACCACCTTCCCCGTTTCATGTTCCGATTCATAGCCCTGTACAT TTGCCTCACGTCATCCCCGTCCAAAACCACCCCCACCACCATAACCACCATCACAACAGCCATAACCACCTTCACAACCACCAGCAGCATCATAATCAGC ACCAACAGTATGTTCCTGTTCGGAATCATAACCAGCATCATCAACAGCATAATTCTAAAAAGGTGCAGCAGCACTCTGACGAAGAGGTCGAGGTTATTGG GAATAAGGATGCAGCTGCTTCTTCGGATCATGCCTCAAAGAGTGACAGTAAAAGTGATGAAGCTATGAATAAGCTCTTAAATCAGGTGGAGTACTATTTC AGTGATTTGAACCTGGCCACTACTGATCATCTTATGAGGTTTATTACCAAAGATCCTGAAGGATATGTGCCAATATCTGTTGTTGCTTCCTTTAAGAAGG TTAAAGCTGCCATAAACAGTAATTCTCAGCTTGCTAACATTCTGCGGAACTCAACAAAGCTTGTAGTTAGTGACGATGGAAAGAAAGTAAGGCGCCAGCA TCCCCTAACTGATTCAGATGTTGAGGAGTTGCAATCTCGTATAGTTGTTGCTGAAAATTTACCTGAGGATCATTGCCACCAAAACCTCATGAAGATATTT TCTGCTGTTGGGAGTGTGAAGACAATTCGTACCTGTCCACCTCAAACTTCTGGTGGTGGTGCTTCTTCAGCATCTAGATCTGCAAAAGCTGATGGGATGC ATTTCAGTAACAAGTTGCATGCATTTGTGGAATATGAGACCATTGAGATTGCTGAGAAAGCAGTTGCTGAGCTAAACGATGAGGGAAACTGGAGGAGTGG TCTTAGGGTTCGGTTAATGCTCAAGCGTGGGTCAAAATCCACTCAGGCACGAGGCAAGAAGGGGCATGATGGTCAAGGGCATTCAGAGGAAGATGAGATT TCTGCAACTGAGCAAATGCCGAATGATAAACAGACAGAAGATCTGTCCCAGCAGCATGATGCCCATTCACATGAGCATTCTCAGGGAGAGGATCATGCCA ATGACAAGGAAGGTGCGCAGAGAAAAGGGCGTAACCGGGGGAGGGGCAAGGGACGTGGGCGAGGTCAATACCATCATAACAACCATCACAATAACCGTGG AAATCATCTGGGAACTTCCCCTTCAAATAATCCAGTTATTGGCGAGCATCCAGCAATGGCCAAGCAACCTCCAGGGCCACGGATGCCAGATGGCACTAGA GGATTTGCAATGGGTCGAGGGAAGCCGGCTGCTGTTAATAATATCGCATGA
AA sequence Show only first row Show all	>Potri.007G144800.1 pacid=42765499 polypeptide=Potri.007G144800.1.p locus=Potri.007G144800 ID=Potri.007G144800.1.v4.1 annot-version=v4.1 MAQQNQEEEEEEVVAIVESVPESLDQSSSSSSSGPSLSRNVSFSKLNAQAPAFVPTRPQSQPQPPPRMTVIPPPPPPPAAMMHMYPPPSPFHVPIHSPVH LPHVIPVQNHPHHHNHHHNSHNHLHNHQQHHNQHQQYVPVRNHNQHHQQHNSKKVQQHSDEEVEVIGNKDAAASSDHASKSDSKSDEAMNKLLNQVEYYF SDLNLATTDHLMRFITKDPEGYVPISVVASFKKVKAAINSNSQLANILRNSTKLVVSDDGKKVRRQHPLTDSDVEELQSRIVVAENLPEDHCHQNLMKIF SAVGSVKTIRTCPPQTSGGGASSASRSAKADGMHFSNKLHAFVEYETIEIAEKAVAELNDEGNWRSGLRVRLMLKRGSKSTQARGKKGHDGQGHSEEDEI SATEQMPNDKQTEDLSQQHDAHSHEHSQGEDHANDKEGAQRKGRNRGRGKGRGRGQYHHNNHHNNRGNHLGTSPSNNPVIGEHPAMAKQPPGPRMPDGTR GFAMGRGKPAAVNNIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43970			RNA-binding protein (.1.2)		Potri.007G144800 [exp]	0	1
					Potri.004G188432 [exp]	12.80	0.8271
AT1G28260			Telomerase activating protein ...		Potri.004G045300 [exp]	21.54	0.7906
					Potri.001G443025 [exp]	27.74	0.7731
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	29.59	0.8204
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Potri.001G126901 [exp]	32.49	0.7416
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.018G079600 [exp]	37.78	0.7913
AT1G15200			protein-protein interaction re...		Potri.001G208200 [exp]	39.29	0.7995
					Potri.017G020864 [exp]	42.33	0.8021
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.004G164500 [exp]	42.95	0.7964	GAS41.1
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.007G046700 [exp]	49.35	0.7790	Pt-KICP.1

Compare expression of checked genes

Potri.007G144800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.