Plant FIBer expression Database

Potri.007G145000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24450 461 / 1e-158 Transcription factor IIIC, subunit 5 (.1)
AT3G49410 458 / 2e-157 Transcription factor IIIC, subunit 5 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G007200
[exp]
818 / 0 AT5G24450 533 / 0.0 Transcription factor IIIC, subunit 5 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042710
[exp]
424 / 2e-146 AT3G49410 396 / 2e-134 Transcription factor IIIC, subunit 5 (.1)
Lus10029672
[exp]
422 / 1e-145 AT3G49410 395 / 3e-134 Transcription factor IIIC, subunit 5 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF09734 Tau95 RNA polymerase III transcription factor (TF)IIIC subunit HTH domain
Representative CDS sequence
>Potri.007G145000.6 pacid=42765688 polypeptide=Potri.007G145000.6.p locus=Potri.007G145000 ID=Potri.007G145000.6.v4.1 annot-version=v4.1
ATGGGAGAGATAAAAGAAGGGAAAGTGAGTGGATTGATACCAAGGAATGAGGGTTTTGCAGTTCATTATCCAGGTTATCCTTCTTCAACATCTCGAGCTA
TCCAAACTCTTGGAGGAACTGAATCAATTCTCAAGGCTCGTAGTTCACAATCTAATACGTTGGAACTGTATTTTCGCCCTGAGGATCCATACTCACATCC
TGTGTCAGGAGAGCTTCGTTCTTGTCACAGTATGTTATTGAAAATTACTAAAAAGAAGAAGTCAAGTCCCATTAATGATGCAAAGCAAGAAACAGATGAG
TTTCATGCTGATATTGTTGCTAGAATACCAGAGGCATATTACTTTGAGGGAATGGCAGATTACGAGCATGTTGTTCCAGTTCATGCTGATGTTGGCAGGA
AGAGATGGAAGAATTGTAAAAAACCTGGTCTAATGGATTTGGGTCCGGATGATGTGATGATGCTACCGCCTCCACTTTTTTCACTCAAAGACGTGCCAGA
AAATATTGTGTTAAGACCACCATCAACATCAAGTTCAAGAAAGAAACAAGATGAACTTCCAGAAACTCATCCCAAGATGACCTTTGAGCCAGCGCTTGGT
ATTGATTTTAAGGATGTTGAAGAGATTCCTAAGGAAATAAATTGGAAGGAATTCATAACAGAAGGCACACCAATGTGGGAGTGGCAGATGGTTGTATCTA
AGCTGTTTGAGGAGCAGCCTATATGGCCCAAATATTCACTGATTGAACGCTTGCTTGATAAGAATCTTAAATTTACCTACCAGACACTTAAAAGGCTTCT
GCTCACAGTCGGGTACTACTTTTCAGGTGGACCATTTCAGAAGTTCTGGATCAGAAAGGGATATGATCCTCGCAAAGATCCCGATTCTCGCAGCAGATAT
CAAAGCATTGGTTTTCGAGTACCGCCTGAATTAAAAAGTTACTGTGATGCTAACACTGCCAAAGGCTTGAAGCATAGATGGGAGGATTTATGCAAATTTC
GATTTTTTCCTTACAGAAACCAATATTCTTTCCAGGTGTATGAACTTGATGATGATTACATTCAACAAGAGATACAAAAGCCTTCGAAGCAGACAAGTTG
CATTTATGAAACAGGATGGTTATCACCGCATGTGCATTATAGTTTAAGACTTTGTGTAAAGGTGAGGTTCCTATCACTATACCCAGAAACTGGTGCGGAA
AAATTTCTCAAAGCTGCTTCTGAGAAATTTATGAAGTCAAAGAGATTATGCATTTACAAAGATGCACCAAAACCTGTTCAGGAGGAGCATCAGCAAACTA
ATGAAGATCATGAAACCTTTAAAAACAATGAAGCTAGTGAAAATCAAGTTGATGTTGAGGTGGACGAACTCGAATCTGATGATGGTGAAGAGGAATTGGA
TACATGGAATGGATTTGGCTGGTGA
AA sequence
>Potri.007G145000.6 pacid=42765688 polypeptide=Potri.007G145000.6.p locus=Potri.007G145000 ID=Potri.007G145000.6.v4.1 annot-version=v4.1
MGEIKEGKVSGLIPRNEGFAVHYPGYPSSTSRAIQTLGGTESILKARSSQSNTLELYFRPEDPYSHPVSGELRSCHSMLLKITKKKKSSPINDAKQETDE
FHADIVARIPEAYYFEGMADYEHVVPVHADVGRKRWKNCKKPGLMDLGPDDVMMLPPPLFSLKDVPENIVLRPPSTSSSRKKQDELPETHPKMTFEPALG
IDFKDVEEIPKEINWKEFITEGTPMWEWQMVVSKLFEEQPIWPKYSLIERLLDKNLKFTYQTLKRLLLTVGYYFSGGPFQKFWIRKGYDPRKDPDSRSRY
QSIGFRVPPELKSYCDANTAKGLKHRWEDLCKFRFFPYRNQYSFQVYELDDDYIQQEIQKPSKQTSCIYETGWLSPHVHYSLRLCVKVRFLSLYPETGAE
KFLKAASEKFMKSKRLCIYKDAPKPVQEEHQQTNEDHETFKNNEASENQVDVEVDELESDDGEEELDTWNGFGW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G24450 Transcription factor IIIC, sub... Potri.007G145000
[exp]
0 1
Potri.010G026350
[exp]
1.41 0.9110
AT4G28880 CKL3 casein kinase I-like 3 (.1) Potri.018G041000
[exp]
1.41 0.9143
AT1G73875 DNAse I-like superfamily prote... Potri.012G057100
[exp]
4.24 0.8728
AT3G53270 Small nuclear RNA activating c... Potri.004G126760
[exp]
4.47 0.8909
AT4G10320 tRNA synthetase class I (I, L,... Potri.007G126501
[exp]
6.92 0.8484
AT5G16715 EMB2247 embryo defective 2247, ATP bin... Potri.004G090766
[exp]
10.81 0.8446
AT5G64560 MRS2-2, ATMGT9 magnesium transporter 9 (.1.2) Potri.010G077900
[exp]
11.40 0.8439
AT3G51370 Protein phosphatase 2C family ... Potri.007G061100
[exp]
14.42 0.8380
AT5G01270 CPL2, ATCPL2 carboxyl-terminal domain (ctd)... Potri.006G099302
[exp]
14.83 0.8149
AT3G53710 AGD6 ARF-GAP domain 6 (.1.2) Potri.016G095100
[exp]
16.73 0.8179

Potri.007G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.