Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43900 1509 / 0 Endonuclease/exonuclease/phosphatase family protein (.1) AT1G05630 1440 / 0 AT5PTASE13, 5PTASE13 Endonuclease/exonuclease/phosphatase family protein (.1.2) AT2G31830 1325 / 0 endonuclease/exonuclease/phosphatase family protein (.1.2) AT1G65580 1189 / 0 FRA3 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) AT2G01900 143 / 3e-36 DNAse I-like superfamily protein (.1) AT2G37440 138 / 3e-34 DNAse I-like superfamily protein (.1.2) AT1G71710 139 / 1e-33 DNAse I-like superfamily protein (.1.2) AT4G18010 137 / 3e-33 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT3G63240 135 / 5e-33 DNAse I-like superfamily protein (.1) AT2G32010 131 / 2e-31 CVL1 CVP2 like 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006900 [exp] 1944 / 0 AT1G05630 1508 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1.2) Potri.010G177400 [exp] 1282 / 0 AT1G65580 1490 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.008G079300 [exp] 1275 / 0 AT1G65580 1475 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Potri.015G032200 [exp] 147 / 2e-37 AT2G01900 476 / 1e-166 DNAse I-like superfamily protein (.1) Potri.012G041600 [exp] 146 / 6e-37 AT2G01900 472 / 3e-165 DNAse I-like superfamily protein (.1) Potri.001G145900 [exp] 142 / 1e-34 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.003G088300 [exp] 139 / 1e-33 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.010G101700 [exp] 136 / 1e-33 AT2G01900 537 / 0.0 DNAse I-like superfamily protein (.1) Potri.007G090200 [exp] 135 / 1e-32 AT5G65090 671 / 0.0 DEFORMED ROOT HAIRS 4, BRISTLED 1, DNAse I-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008330 [exp] 1434 / 0 AT2G43900 1477 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10027073 [exp] 1383 / 0 AT2G43900 1455 / 0.0 Endonuclease/exonuclease/phosphatase family protein (.1) Lus10041607 [exp] 1216 / 0 AT1G65580 1398 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024112 [exp] 650 / 0 AT1G65580 733 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10024113 [exp] 580 / 0 AT1G65580 672 / 0.0 FRAGILE FIBER3, Endonuclease/exonuclease/phosphatase family protein (.1) Lus10011041 [exp] 141 / 2e-34 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10003010 [exp] 137 / 2e-33 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10006597 [exp] 134 / 2e-33 AT2G32010 581 / 0.0 CVP2 like 1 (.1.2) Lus10039352 [exp] 134 / 5e-32 AT2G32010 894 / 0.0 CVP2 like 1 (.1.2) Lus10028697 [exp] 133 / 2e-31 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0530 [poplar] [flax] DNase_I-like PF03372 [poplar] [flax] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Potri.007G145100.2 pacid=42765840 polypeptide=Potri.007G145100.2.p locus=Potri.007G145100 ID=Potri.007G145100.2.v4.1 annot-version=v4.1 ATGCCTAACTCTTCGCTCTCTCTATTTTCTGTCTATCTGCCTCTTCCTCTTGAACAACACCCCAACGTGCTCTCCTCTTTCCTTCTCCTTCGGATCCTTT CCTTTAGACTCATTCTTCTTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTTCCTCCTCCTCCTCCTTTCAACATTTCCAACTTTTCTTTTGAATATTT ACTTATATCTGATCTCGTCAATATATATATATATATATGTACACCACCATCTTCATGGTCATCAATGGATCATGATAGAAACAATGACATTTTTGAAGAT GAAGATAAAGAAGCTTTACAAGGTCTATCTCCTGTCCCTCCACCCCCGCGAAATATCCATTCTTATAGCCAGCAGCTCCGTGCCACCTCTTCAGGACCTA CTGCTAAAAGACACGACAAAGGTAGAAAACACAGCCTTGATGACATCCCTATGCCTGTGGTTTCTGAAAGTTTCTTTGACGTCTCTTCCTCTGACGATGA ATTCTTCCTTCATTCCTCTTCTCCTTCTAACACCACTCGTTCTCGCGGTGCCAGCGGTGAAGATTTCTTTGTTGGTGCTGACGATGATCAACTCAAGCAA TTCCAACCATTGCCTGAGTTCATTGGAAATGGAAGTGGGACCGGAATCTTTAAGTATCCAGCACGTTCAGCCATGCACGGTGGACGGCCACCTTGTCTAG AACTTAGGCCACATCCTTTAAGAGAAACTCAAGTGGGGAAGTTTTTGAGAAACATTGCTTGTACCGACACACAGTTATGGGCTGGTCAGGAGTGTGGGGT AAGGTTTTGGAGTTTTGAGAATGCATACGAGGCTGGTAGGGGTTTAGGTGGGAGAGTGAGACGAGGCGATGAAGATGCTGCACCATTTTATGAGTCGGCG AATACCTCTCCTACATTGTGTTTAATGGCTGACAGTGCTAATAGATTGGTTTGGAGTGGGCATAAAGATGGGAAGATTAGATCTTGGAAAATGGATCAAC ATTTGGACGATGCTAATTCTCATTTTAAGGAAGGATTATCATGGCAGGCTCATAAGGGTCCTGTTCTTTCTATAGTTATGAGTTCTTATGGTGATCTGTG GTCAGGTTCTGAGAATGGTGTTATTAGGATTTGGCAATGGGATGTCATTGAGAAATCTCTCTCTCTTTCATCAGAGGAAAAGCACATGGCTGCTTTATTG GTGGAGAGGGCTTGCATTGACCTCAGGAGCCAAGTCACTATATATGGTGCCTGTAGCATATCTTCTTCAGATGTAAAGTGCTTGTTAGCTGACAATGTTA GAGCTAAAATTTGGTGTGCTCAGCCTCTTTCCTTCTCTATTTGGGATGCTCGTACAAAGGAGCTCGTGAAGGTATTCAATACCGAGGGCCAAATTGAGAA TCGAGCTGAACTGCCGTCAGTGCAACAGCAAGATCAGCCAGTAGAAGATGAGATGAAGGTAAAATTTGTACACCCATCAAAAAAGGAGAAATCCGGGGGC TTTCTGCAACGTTCACGTAATGCTATAATGGGAGCAGCAGACGCTGTTCGCCGAGTTGCAACCAGGGGAGCAGGAGCATTTGTAGACGATACCAAGAGAA CAGAAGCACTAGTGCTGACTATTGATGGAATGATCTGGACTGGATGTTCCGATGGCCTTCTTGTGCAGTGGGATGGGAATGGAAATCGTTTACAAGAATT CAGTCATCATTCTTCTGCTGTTCAATGTTTTTGCACTTTCGGAACACTGATATATGTTGGCTATGTGAGCGGTATGATCCAAGTATTGGACCTGGAGGGG AAAATGATTTCTGCATGGGTTGCTCACAGTAATCCTGTGTTAAAAATGGCTGTCGGAAATAGATATGTTTTTAGCCTGGCAAATCATGGTGGCATACGTG GATGGAGTATTGCATCCCCAGGACCTATTGACAGCATAATACGATCAGAAGTGGCATCGAGAGAACTAGAGTATACAAGACGGAACAGTTTCAGAATTTT AGTTGGTACATGGAATGTCGGTCAAGGAAGAGCATCCCAGGACGCCCTTAAAGCATGGTTAGGTTCTGCTGCATCAGACGTCGGCATTATTGTTGTTGGG TTACAAGAAGTAGAGATGGGTGCGGGTTTTCTTGCCATGTCTGCAGCAAAAGAAACTGTAGGACTTGAAGGGAGTGCCATTGGGCACTGGTGGCTGGACA ATATAGGAAAAGCCTTAGATGAAGGAAAGACTTTTGAACGTATGGGTTCCAGGCAGCTTGCAGGCTTGCTCATATCTCTTTGGGTAAGAAAGAATCTCAG AAAACATGTTGGTGATGTTGATGCTGCAGCAGTTCCATGTGGCTTTGGACGTGCAATTGGTAATAAGGGAGGTGTAGGTTTGAGAATTAGAGTTCTTGAC AGGATAATGTGCTTTGTTAACTGTCACTTGGCTGCACATTTGGAAGCAGTCAATCGGCGCAATGCTGATTTTGATCATATTTTTCGAAACATGGCCTTTG GTCGGTCATCAAATGTTACGGCAGCTGCTGGTGTCTCAACTGCCAGTCACACGGTTAAGGGTACTCATGCTGCAAGTACAACCCATGAAGAATCCAGGCT TGATTTAGCTGAAGCAGATATGGTGGTGTTTCTTGGTGATTTTAATTATCGGCTTTTTGGTATATCATATGATGAAGCAAGAGACTTTGTTTCACAAAGA AGCTTTGATTGGCTTAGAGAAAAGGATCAGCTCAGAGCAGAGATGCAGGCAGGGAAAGTTTTTCAAGGAATGCGTGAGGCAGTCATTGCATTCCCTCCTA CTTATAAGTTTGCAAGACACCAACCAGGTTTAGCAGGATACGATTCCGGGGAGAAAAAACGCATTCCAGCTTGGTGTGACAGGATAATATACCGTGACAA TCGATCAGCTCCAGTGTCTGATTGCAGTTTAGACTGCCCTGTAGTCTCATCAATTATACAGTATGAAGCTTGCATGGATGTCATAGAGAGTGATCACAAA CCTGTCCGCTGCAAGTTCCATGTTCAAGTTGCCCATGTTGATAGATCAGTGAGGAGACAAGAATTTGGAGAAGTGATCAGGTCTAATAAGAAAGTAAGGT CTATCCTCGAACAATTACCTCATGTGCCAGATACCGCTATAAGCACCAACAACATCCGCCTTCAAAGCCAGGACACAGTCGTCTTTCGAATCACCAACAA GGATGTTAAGGAAAAAGCCATATTCAGAATTACCTGCGAAGGTGTGTGCACTGTCAGCGACGACAGAGAGGAAAACACTTATCATTCACGGGGTTTGTTT GGCTTTCCAAGATGGCTCGAGGTAACACCAGCAGCAGGCATAATTAAACAAGACCACTTCGTGGAGGTCGCAGTACATCATGAAGATTTCCGTTCCTTAG AAGAGTTAGTTGATGGAATCCCACAAAACTGGTGGTCCGAAGACACACGAGACAAGGAAGCTACATTGTCTGTGAATATCCAAGGCAGTAATAGAACGGA GACACAAAGTCACCAAATCGTTGTTCGACACTGCTACTCAGCCAAGACAGTGCGCATCGACTCTAAATCAAACAATTCTTGGAAAGGAAAAAGAGGCTCA GTTCACCGGTCTGACCTTAGGCAACTAAGTGGTTCCTCTGATATGGTTGATGATTTCCGAAACTTTTGA
AA sequence Show only first row Show all	>Potri.007G145100.2 pacid=42765840 polypeptide=Potri.007G145100.2.p locus=Potri.007G145100 ID=Potri.007G145100.2.v4.1 annot-version=v4.1 MPNSSLSLFSVYLPLPLEQHPNVLSSFLLLRILSFRLILLLLLLLLLLLLLPPPPPFNISNFSFEYLLISDLVNIYIYICTPPSSWSSMDHDRNNDIFED EDKEALQGLSPVPPPPRNIHSYSQQLRATSSGPTAKRHDKGRKHSLDDIPMPVVSESFFDVSSSDDEFFLHSSSPSNTTRSRGASGEDFFVGADDDQLKQ FQPLPEFIGNGSGTGIFKYPARSAMHGGRPPCLELRPHPLRETQVGKFLRNIACTDTQLWAGQECGVRFWSFENAYEAGRGLGGRVRRGDEDAAPFYESA NTSPTLCLMADSANRLVWSGHKDGKIRSWKMDQHLDDANSHFKEGLSWQAHKGPVLSIVMSSYGDLWSGSENGVIRIWQWDVIEKSLSLSSEEKHMAALL VERACIDLRSQVTIYGACSISSSDVKCLLADNVRAKIWCAQPLSFSIWDARTKELVKVFNTEGQIENRAELPSVQQQDQPVEDEMKVKFVHPSKKEKSGG FLQRSRNAIMGAADAVRRVATRGAGAFVDDTKRTEALVLTIDGMIWTGCSDGLLVQWDGNGNRLQEFSHHSSAVQCFCTFGTLIYVGYVSGMIQVLDLEG KMISAWVAHSNPVLKMAVGNRYVFSLANHGGIRGWSIASPGPIDSIIRSEVASRELEYTRRNSFRILVGTWNVGQGRASQDALKAWLGSAASDVGIIVVG LQEVEMGAGFLAMSAAKETVGLEGSAIGHWWLDNIGKALDEGKTFERMGSRQLAGLLISLWVRKNLRKHVGDVDAAAVPCGFGRAIGNKGGVGLRIRVLD RIMCFVNCHLAAHLEAVNRRNADFDHIFRNMAFGRSSNVTAAAGVSTASHTVKGTHAASTTHEESRLDLAEADMVVFLGDFNYRLFGISYDEARDFVSQR SFDWLREKDQLRAEMQAGKVFQGMREAVIAFPPTYKFARHQPGLAGYDSGEKKRIPAWCDRIIYRDNRSAPVSDCSLDCPVVSSIIQYEACMDVIESDHK PVRCKFHVQVAHVDRSVRRQEFGEVIRSNKKVRSILEQLPHVPDTAISTNNIRLQSQDTVVFRITNKDVKEKAIFRITCEGVCTVSDDREENTYHSRGLF GFPRWLEVTPAAGIIKQDHFVEVAVHHEDFRSLEELVDGIPQNWWSEDTRDKEATLSVNIQGSNRTETQSHQIVVRHCYSAKTVRIDSKSNNSWKGKRGS VHRSDLRQLSGSSDMVDDFRNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43900			Endonuclease/exonuclease/phosp...		Potri.007G145100 [exp]	0	1
					Potri.008G124350 [exp]	10.53	0.6861
AT2G32320			tRNAHis guanylyltransferase (....		Potri.002G233300 [exp]	35.19	0.6445
AT5G59560		SRR1	SENSITIVITY TO RED LIGHT REDUC...		Potri.003G198000 [exp]	36.74	0.6115
AT5G15640			Mitochondrial substrate carrie...		Potri.008G100100 [exp]	36.86	0.6605
					Potri.004G200600 [exp]	40.00	0.5997
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.015G053100 [exp]	45.37	0.6368	Pt-ARP4.1
					Potri.018G071050 [exp]	54.22	0.6120
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060210 [exp]	56.23	0.6325
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	69.28	0.6383
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.006G079800 [exp]	77.03	0.5702

Compare expression of checked genes

Potri.007G145100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.