Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31820 751 / 0 Ankyrin repeat family protein (.1) AT1G05640 687 / 0 Ankyrin repeat family protein (.1) AT1G07710 451 / 4e-152 Ankyrin repeat family protein (.1) AT5G60070 445 / 1e-149 ankyrin repeat family protein (.1) AT5G02620 411 / 8e-137 ATANK1, ANK1 ankyrin-like1 (.1) AT3G12360 318 / 3e-100 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 317 / 3e-100 Ankyrin repeat family protein (.1) AT3G09550 296 / 1e-91 Ankyrin repeat family protein (.1) AT4G03500 92 / 4e-19 Ankyrin repeat family protein (.1) AT1G03670 91 / 6e-19 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006800 [exp] 957 / 0 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 452 / 9e-153 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 449 / 3e-151 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 442 / 8e-149 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 439 / 3e-147 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 430 / 4e-144 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 345 / 3e-111 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 331 / 6e-106 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 327 / 1e-103 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008329 [exp] 771 / 0 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 551 / 0 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 466 / 9e-158 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 465 / 2e-157 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 417 / 1e-138 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 400 / 1e-132 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 341 / 9e-109 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10021814 [exp] 323 / 1e-102 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 324 / 2e-102 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10034579 [exp] 323 / 2e-102 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.007G145200.3 pacid=42765303 polypeptide=Potri.007G145200.3.p locus=Potri.007G145200 ID=Potri.007G145200.3.v4.1 annot-version=v4.1 ATGAAGAAACAAAGCAGCTTCAATGGAAGAATTATGGAAAGGCAGCGGAGTTTCAGCGGAGTAACTGACAAAAAGAAAGTGTTTGAAAAGCAAGTGAGTT TTCAAGGAATACCAGATAAACAGAAAGTGATGGAAAAACACCCCAGTTTTCTAGGTGTAGCAGAAAATGGGTCAGCTTCTCATAGAGTGATGGAAAAACT CCCCAGTTTTCAAGGTGTAGCAGAAAATGGGTCAGCTTCTCATAGAGTGATGGAAAAACTCCCCAGTTTTCAAGGTGTAGCAGAAAATGGGTCAGCTTCT CATAGAGTGATTGAAAAACACCCCAGTTTTCGTGGAGTGGAGAAGGGTTTTCGTGGATTTCTGGATAAACAGAAGAGTTTTCGTGTAGTGATGGAGAGAC AACTTAGTTTTATTGGTGGTGGTGAGAGGAAAAAGACTAAAGATTCACCTGGAAAGCGAGGTGACTCACAGATTCATTTGGCAGCACGTACTGGGAATTT GAGTAGAGTGAGAGAGATCCTTCAGAATTCTGATGGCACTGATTTGGAGGTTCTGTTGGCAATGCAGAATCATGAAGGAGAAACTCCTCTTTATGCAGCT GCAGAGAATGGGCATGCTGAGGTTGTTGCTGAAATGCTCGAATCCATGGACCTGGAGACTGCATCTATTGCAGCTAGGAATGGGTATGATCCATTCCATG TGGCTGCAAAGCAGGGTCATCTTGATGTCTTGAGGAAGCTTTTGGGTGTGTTCCCCAACTTGGCCATGACAACTGATTCATCATGTACAACTGCTCTACA CACTGCTGCAACTCAAGGGCACATTGATGTGGTCAATCTTCTTTTAGAAACAGATGCAAATCTTGTTAAGATTGCACGGAATAATGGTAAGACTGTCCTC CATTCAGCTGCAAGGATGGGGCACTTGGAAGTTGTGAGGTCCCTCCTAATCAAGGATTCAAGCACTGGTTTTAGGACTGATAAAAAAGGACAAACTGCAT TGCACATGGCTGTGAAAGGGCAAAATGAGGAAATTGTGCTGGAATTGCTAAAACCTGACCCCTCTGTTATGCATGTGGAAGACAATAAGGGAAACACAGC ATTGCATGTTGCAATAAAGAAAGGGCGTGCTCAGAATGTACGTTGTCTGTTATCAGTCGAGGGTGTTAACATCAATGCTATTAACAAAGCTGGAGAGACC CCACTAGACATTGCAGAAAAACTTGGGGTTCAAGACCTTGTATACATTTTGAAGGAAGCAGGGGCTAACAATTCCAAAGACTGTGGAAAGCCCCCTAGTT CAGCAAAGCAACTAAAGCAGACTGTCAGTGCCATAAAACATGATGTCCAGTCCCAGCTCCAACAGACCCGTCAAACTGGCTTCAAGGTGCAGAAAATTGC CAAGAAGCTGAAGAAGCTACACATTAGTGGCCTCAACAATGCTATAAATAATGCAACTATTGTTGCGGTTCTCATTGCTACAGTTGCTTTTGCAGCCATT TTCACTGTGCCTGGCCAGTATGTTGAGGAGAAAACTGATGGGGCAGCAATTGGGCAAGCCCATGTAGCAAGAAATCCTGCTTTCTTAGTCTTCATCATAT TTGACAGCCTGGCATTATTCATTTCTCTGGCTGTCGTTGTAGTCCAAACGTCTGTTGTTGTGATTGAACAAAAGGGAAAGAAGCAGCTTGTGTTTATTAT TAACAAACTCATGTGGCTCGCTTGCCTCTTCATTTCAGCGGCCTTTATTTCTCTTACTTATGTGGTGGTGGGTAAGAAATTTAGGTGGCTTGCTATCTAT GCAACAGTCCTTGGTGGCATAATCATGCTCGCTACAATTGGCTCCATGTGCTATTTTGTCATTTTACATAGGATGGAGGAGTCAACTTTAAGGAATATAA GGAGAGAAAGTCGGTCCCGCTCTTATTCTATGTCCGCGGCATCAGATCAAGAGATTTTGAACAGTGAATGTAAGAGGATGTATGCACTCTAA
AA sequence Show only first row Show all	>Potri.007G145200.3 pacid=42765303 polypeptide=Potri.007G145200.3.p locus=Potri.007G145200 ID=Potri.007G145200.3.v4.1 annot-version=v4.1 MKKQSSFNGRIMERQRSFSGVTDKKKVFEKQVSFQGIPDKQKVMEKHPSFLGVAENGSASHRVMEKLPSFQGVAENGSASHRVMEKLPSFQGVAENGSAS HRVIEKHPSFRGVEKGFRGFLDKQKSFRVVMERQLSFIGGGERKKTKDSPGKRGDSQIHLAARTGNLSRVREILQNSDGTDLEVLLAMQNHEGETPLYAA AENGHAEVVAEMLESMDLETASIAARNGYDPFHVAAKQGHLDVLRKLLGVFPNLAMTTDSSCTTALHTAATQGHIDVVNLLLETDANLVKIARNNGKTVL HSAARMGHLEVVRSLLIKDSSTGFRTDKKGQTALHMAVKGQNEEIVLELLKPDPSVMHVEDNKGNTALHVAIKKGRAQNVRCLLSVEGVNINAINKAGET PLDIAEKLGVQDLVYILKEAGANNSKDCGKPPSSAKQLKQTVSAIKHDVQSQLQQTRQTGFKVQKIAKKLKKLHISGLNNAINNATIVAVLIATVAFAAI FTVPGQYVEEKTDGAAIGQAHVARNPAFLVFIIFDSLALFISLAVVVVQTSVVVIEQKGKKQLVFIINKLMWLACLFISAAFISLTYVVVGKKFRWLAIY ATVLGGIIMLATIGSMCYFVILHRMEESTLRNIRRESRSRSYSMSAASDQEILNSECKRMYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31820			Ankyrin repeat family protein ...		Potri.007G145200 [exp]	0	1
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.001G057200 [exp]	11.35	0.7463
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	11.48	0.7189
AT3G26020			Protein phosphatase 2A regulat...		Potri.010G054400 [exp]	16.43	0.7104
AT3G62860			alpha/beta-Hydrolases superfam...		Potri.014G129000 [exp]	19.89	0.7132
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Potri.016G085500 [exp]	28.19	0.7167
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Potri.011G091200 [exp]	30.80	0.6928	MRP1.1
AT1G68920	bHLH	bHLH049, ACE1	basic helix-loop-helix (bHLH) ...		Potri.010G136100 [exp]	31.74	0.7064
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170300 [exp]	35.55	0.7064
AT1G15660		CENP-C	CENP-C HOMOLOGUE, centromere p...		Potri.001G178200 [exp]	36.33	0.6468
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	46.61	0.6576	Pt-CEO1.1

Compare expression of checked genes

Potri.007G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.