Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G43890 566 / 0 Pectin lyase-like superfamily protein (.1) AT1G05660 514 / 0 Pectin lyase-like superfamily protein (.1) AT1G05650 506 / 4e-180 Pectin lyase-like superfamily protein (.1) AT2G43880 464 / 1e-163 Pectin lyase-like superfamily protein (.1) AT3G59850 442 / 6e-155 Pectin lyase-like superfamily protein (.1) AT2G43870 436 / 7e-153 Pectin lyase-like superfamily protein (.1) AT1G65570 395 / 3e-136 Pectin lyase-like superfamily protein (.1) AT2G43860 378 / 2e-129 Pectin lyase-like superfamily protein (.1) AT3G57510 283 / 6e-92 ADPG1 Pectin lyase-like superfamily protein (.1) AT1G17150 282 / 6e-92 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G006700 [exp] 672 / 0 AT2G43890 591 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006500 [exp] 632 / 0 AT2G43890 552 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.017G006400 [exp] 467 / 7e-165 AT1G05660 472 / 1e-166 Pectin lyase-like superfamily protein (.1) Potri.010G248200 [exp] 457 / 8e-161 AT2G43870 534 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G144500 [exp] 451 / 1e-158 AT3G59850 493 / 3e-175 Pectin lyase-like superfamily protein (.1) Potri.007G144400 [exp] 439 / 1e-153 AT3G59850 476 / 2e-168 Pectin lyase-like superfamily protein (.1) Potri.007G144100 [exp] 434 / 9e-152 AT2G43870 525 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 433 / 2e-151 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1) Potri.007G144200 [exp] 432 / 4e-151 AT3G59850 482 / 1e-170 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011419 [exp] 452 / 1e-158 AT2G43870 507 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10002123 [exp] 445 / 7e-156 AT2G43870 498 / 5e-177 Pectin lyase-like superfamily protein (.1) Lus10002125 [exp] 441 / 3e-154 AT3G59850 509 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10008343 [exp] 423 / 4e-147 AT1G05650 425 / 1e-147 Pectin lyase-like superfamily protein (.1) Lus10002124 [exp] 419 / 5e-146 AT2G43870 505 / 7e-180 Pectin lyase-like superfamily protein (.1) Lus10011418 [exp] 419 / 8e-146 AT2G43870 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Lus10010584 [exp] 417 / 1e-144 AT1G05660 424 / 2e-147 Pectin lyase-like superfamily protein (.1) Lus10005304 [exp] 411 / 2e-142 AT1G05660 420 / 1e-145 Pectin lyase-like superfamily protein (.1) Lus10022530 [exp] 398 / 2e-137 AT2G43870 471 / 4e-166 Pectin lyase-like superfamily protein (.1) Lus10002126 [exp] 381 / 1e-130 AT2G43870 461 / 1e-162 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.007G145300.1 pacid=42766218 polypeptide=Potri.007G145300.1.p locus=Potri.007G145300 ID=Potri.007G145300.1.v4.1 annot-version=v4.1 ATGGCCAAGTTTGTTGTTTCTTTTGTAGTACTCTCCTTCTTCTACTCCTTTCACCTGTCAAACGCAGCTTCTACAACCCATAATGTGATCAAGTTTGGTG CAAAACCAGATGGCAAGACTGACGCAACCCAACCCTTTCTTAAGGCATGGTCAGCTGCATGCAGATCGGCTACTCCGTCCACAATTTATGTGCCTAAAGG AAGGTACTTGCTAAAGGCAATAGTGTTTAGGGGTCCGTGCAAGAATAAAATTACGGTTCAGATAGGTGGAACCCTTATAGCTCCTACAGATTACCGTGCC CTAGGCAACTCAGGGTACTGGATTTTGTTCATCGAGACTAATCGAGTTTCTGTCTTTGGTGGCACCCTTGATGCTAAAGGTGCTGGCTTCTGGGCTTGCA GGAAATCTCGACAGAATTGTCCTGTTGGAGCTGCGTCGATAACATTCAACTGGGCAAATGACATCCTGATTAGCGGCTTGACGTCTATCAACAGTCAATC AACTCACCTTGTTATCAACAGTTGCAAGAAAGTTGTGGTCCGAAATGTAAGGACAATTGCACCAGACCAAAGCCCCAACACCGATGGCATTCACGTGCAA GCATCGACCGGAGTTTCAATCACTGGCAGCACACTTCAGACGGGAGATGACTGCATATCAATTGGTCCAGGCACTAGGAACATGCTGATGAGCGGCATTA AGTGTGGCCCTGGACATGGTATCAGCATTGGAAGTCTAGGCAAGGAATTCAACGAAGATGGAGTGGAAAATATAATGGTAACAAATTCAGTCTTCAGTGG CTCAGACAATGGTGTAAGGATAAAATCATGGGCCAGACCCAGCAATGGGTTTGTGAGGAAGGTTGTCTATAAAAACCTGATTATGAAGAATGTTCAGAAC CCAATTATCATCGACCAAAATTATTGCCCTGACAACAAAGGTTGTCCTCGTCAGACTTCTGGGCTGAAGATTAGTCAGGTGATATACAAAAACATACAAG GAACATCAGCAACAGCAGAGGCAGTAACATTTGACTGCAGCCCTAGTAATCCATGCAGAGGAATCAGATTACAAGACATAAGACTTACTTACAAGAATAA AGCAGCAACATCATCATGCAAGAACGTAGGTGGAACAAGCGCTGGAGTGCTTATGCCTGAGAGTTGTGTATAA
AA sequence Show only first row Show all	>Potri.007G145300.1 pacid=42766218 polypeptide=Potri.007G145300.1.p locus=Potri.007G145300 ID=Potri.007G145300.1.v4.1 annot-version=v4.1 MAKFVVSFVVLSFFYSFHLSNAASTTHNVIKFGAKPDGKTDATQPFLKAWSAACRSATPSTIYVPKGRYLLKAIVFRGPCKNKITVQIGGTLIAPTDYRA LGNSGYWILFIETNRVSVFGGTLDAKGAGFWACRKSRQNCPVGAASITFNWANDILISGLTSINSQSTHLVINSCKKVVVRNVRTIAPDQSPNTDGIHVQ ASTGVSITGSTLQTGDDCISIGPGTRNMLMSGIKCGPGHGISIGSLGKEFNEDGVENIMVTNSVFSGSDNGVRIKSWARPSNGFVRKVVYKNLIMKNVQN PIIIDQNYCPDNKGCPRQTSGLKISQVIYKNIQGTSATAEAVTFDCSPSNPCRGIRLQDIRLTYKNKAATSSCKNVGGTSAGVLMPESCV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G43890			Pectin lyase-like superfamily ...		Potri.007G145300 [exp]	0	1
AT2G41810			Protein of unknown function, D...		Potri.006G050300 [exp]	4.79	0.8240
AT2G41810			Protein of unknown function, D...		Potri.006G050400 [exp]	9.38	0.8020
AT2G35880			TPX2 (targeting protein for Xk...		Potri.001G140400 [exp]	10.81	0.7980
					Potri.001G073166 [exp]	16.43	0.7968
AT5G05840			Protein of unknown function (D...		Potri.008G062500 [exp]	17.32	0.7791
AT2G28690			Protein of unknown function (D...		Potri.001G235200 [exp]	17.88	0.7891
					Potri.010G072200 [exp]	18.76	0.7944
AT3G02885		GASA5	GAST1 protein homolog 5 (.1)		Potri.017G124200 [exp]	18.97	0.7924	Pt-GASA5.2
AT1G65680		ATHEXPBETA1.4, ...	expansin B2 (.1)		Potri.014G066300 [exp]	24.37	0.7319	PtrEXPB1,Pt-EXPB4.1
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Potri.001G288500 [exp]	24.45	0.7817

Compare expression of checked genes

Potri.007G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.