Plant FIBer expression Database

Potri.007G145400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G43990 252 / 2e-74 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G002200
[exp]
978 / 0 AT2G43990 246 / 3e-72 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027108
[exp]
128 / 9e-32 AT2G43990 95 / 8e-21 unknown protein
Lus10008351
[exp]
128 / 6e-31 AT2G43990 93 / 1e-19 unknown protein
Lus10027992
[exp]
91 / 6e-19 AT2G43990 86 / 1e-17 unknown protein
Lus10008165
[exp]
80 / 9e-16 AT2G43990 74 / 3e-14 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G145400.1 pacid=42766629 polypeptide=Potri.007G145400.1.p locus=Potri.007G145400 ID=Potri.007G145400.1.v4.1 annot-version=v4.1
ATGAACCAATCATCAAAAACCCACAAGCAAAAACGCCAAACTGGATTACCAGAACAACCCACCAAGACCCACAGGAGAAAGAAACAGCCTCAGCACCAGC
CAAGCTTTAGAAGAAACCCACTTCAAGATCTCAATAATGGTGGCATTGATAGCACCAGCATTGATAACACCAGCAATGCTTCTTCTTTATCCTCCATTGA
AGCTCCTAAGGGCTGTCTCAGGTTCTTCCTCTCTCACTCTTCTTCTTCCAGGACTGCAAAAACTCCTTTCAATAATAGCAGTAATAATCAGAGACTGATA
AAAGTAAAGCCCTTCTCCTCAAAAACCCCCACGTCAGCTCCTGATATGATGAGACCCCCAAAGGAGAACTCATCAAGGCAGAACCTTTTTGAGAGACCCA
TTTCAAAAAAGGTGGAGAAGGTGAAGAGAAACCATCCTCCATGTCTGTACCAATGGCAATCTGGTAAGAAACGCACTTGTTCTAGAAATGAAATTGCTAA
TGCTAAAGTTTCGTCCTTTTCGGAATCAAGTGGCAGTCTTGTAAATAATAAGCTGAAATCTGGGTCTGGAGAGTTGAAAAAGGTGATAATTGATGGAGTA
TATGAGGGTAGTGAAGCAAATTTGACTCCTTTGTGTAAAGTGGCCAGTGGGTCTGGTTTGAATCTTGGAGCTGATGGTAAGGTTATGAATGATGATTTTT
ATGAGAAATCATCAAATTGTAATACTGACTCAAAATCAACAAGTAGCAATACCAAGACACCTCCAGTTCAGCCCTCAGTATCACCAGAGATACAATGTGG
ATCATCTATGAAGCTAATGACAGGGAAACCGATTACTCCTGCTACTTGTTATGGTGCTGGTCATGTTGTGTCTGGGGTCACTGACAAGAGGAAGTGTAGG
CCGAGAGGGATACTCGCTTGTGGAGAAGCTAAAGCACTTGGTAGTTTTGATAGTGATGAGGATATTGAACAAGAGAATGATATAGCGCTTGTTGAGAATT
CTGCTCTTTCTGTGTTGCCTTTGCCTATTGAAGCTTCAATGCATTGGCTTTTATCACCCTGCGATGAGGAGGATGAGGACCAGAAGGAGAATTCTCGAAA
CAAGTTATGCGGTTTTCAGAGATTGGAGGTGCGTGCCATGCTCAATTCTCCTGCTTCAATTTCATCTGGCTATGGTGGCTTTTCACCGAATTTGTGCAAT
ACAAGTGCTAACAGAAGTATCTCTACTGTTAGTGCTGGGAGGAGGAGGAGTGCTTCTTTGCTTTCTCCCAGTGAGCTCCCTCTTCCCGAGTTTCAAGGAT
TTCTGGGAACTCCTTTATGTGACGACTTTGCTGTTTCACCTTTAGAAGAAGAGACGAATAATCGCCGTGGCCTAGATGGAGAGAACTCTCCATTCTCCAT
AGGCTCCTTGGGTAGTGGGAATGTAATCCAGACCCCCCAATCTGATTCTAGCTCAGATAGACGAGTTGGCGCGTCTTGGTTACAAGTAGATGGTAATAGA
AAGAAATGTAGCTTTGATTCTGAACTCAATTCAGTGGCTGAGCATCTTCAGATGACTAGTTTATCTCCCAAGAGCCATGCATCAATATGGGATCCAACCA
ATTCAAGTTTTCGATTTGATTCTCTGACCATGCCTTCCAATTCAGTCGATCTTTCTAAGTTTCACAAAATTTTGGACGATCGGGCTTCTTGGTTTTCTAA
TTCTACAATCGAGAATGTATCACAATCTCAGATGAGAATATCTTGGAGGGAAGGATTGGTAAGTCGTATTTTTGAGATGGATGAATTTGATTGTTGTAGA
TACTTGTCTGATGAAGAGCATGATGGCAGTGCCTGCAAAATTGATTGCTCAAAATCTCATAAGAGTCCTGAGCTCAATGTTGATGCAGCAACTGATCGCA
TTTCAATTAACTGTTTTGGATCTACTGAATATGTAATGAAGGAACAGGGAACAGGTGACAAAACCAAGGATAGCCTCCCTTCTCAGCCACCATGTTCATG
CGCAGAGTCCATAAGCACCGATGGTGGTGGTCTTGTTTGTTCAGATGATTCAGATTGGACCCTATGCTACAAGAACCATTTGTTTCAAGTATAA
AA sequence
>Potri.007G145400.1 pacid=42766629 polypeptide=Potri.007G145400.1.p locus=Potri.007G145400 ID=Potri.007G145400.1.v4.1 annot-version=v4.1
MNQSSKTHKQKRQTGLPEQPTKTHRRKKQPQHQPSFRRNPLQDLNNGGIDSTSIDNTSNASSLSSIEAPKGCLRFFLSHSSSSRTAKTPFNNSSNNQRLI
KVKPFSSKTPTSAPDMMRPPKENSSRQNLFERPISKKVEKVKRNHPPCLYQWQSGKKRTCSRNEIANAKVSSFSESSGSLVNNKLKSGSGELKKVIIDGV
YEGSEANLTPLCKVASGSGLNLGADGKVMNDDFYEKSSNCNTDSKSTSSNTKTPPVQPSVSPEIQCGSSMKLMTGKPITPATCYGAGHVVSGVTDKRKCR
PRGILACGEAKALGSFDSDEDIEQENDIALVENSALSVLPLPIEASMHWLLSPCDEEDEDQKENSRNKLCGFQRLEVRAMLNSPASISSGYGGFSPNLCN
TSANRSISTVSAGRRRSASLLSPSELPLPEFQGFLGTPLCDDFAVSPLEEETNNRRGLDGENSPFSIGSLGSGNVIQTPQSDSSSDRRVGASWLQVDGNR
KKCSFDSELNSVAEHLQMTSLSPKSHASIWDPTNSSFRFDSLTMPSNSVDLSKFHKILDDRASWFSNSTIENVSQSQMRISWREGLVSRIFEMDEFDCCR
YLSDEEHDGSACKIDCSKSHKSPELNVDAATDRISINCFGSTEYVMKEQGTGDKTKDSLPSQPPCSCAESISTDGGGLVCSDDSDWTLCYKNHLFQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G43990 unknown protein Potri.007G145400
[exp]
0 1
AT5G65360 Histone superfamily protein (.... Potri.003G210100
[exp]
2.00 0.8762 HTR902
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.001G329700
[exp]
2.44 0.8620
AT3G03680 C2 calcium/lipid-binding plant... Potri.013G066400
[exp]
5.29 0.8432
AT5G11300 CYC2BAT, CYCA2;... CYCLIN A2;2, mitotic-like cycl... Potri.006G247200
[exp]
5.29 0.8419
AT3G51950 C3HZnF Zinc finger (CCCH-type) family... Potri.009G050700
[exp]
7.48 0.8409
AT1G64390 ATGH9C2 glycosyl hydrolase 9C2 (.1) Potri.003G139600
[exp]
8.24 0.8015
AT3G51740 IMK2 inflorescence meristem recepto... Potri.016G126300
[exp]
10.95 0.8289 Pt-RHG1.4
AT5G65360 Histone superfamily protein (.... Potri.003G207700
[exp]
14.42 0.8231
AT1G65590 HEXO3, ATHEX1 beta-hexosaminidase 3 (.1) Potri.008G079400
[exp]
14.49 0.8425
AT2G07170 ARM repeat superfamily protein... Potri.006G079500
[exp]
14.96 0.8191

Potri.007G145400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.