Plant FIBer expression Database

Potri.007G145500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59880 55 / 7e-11 unknown protein
AT2G44010 40 / 3e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G002100
[exp]
162 / 2e-53 AT3G59880 59 / 2e-12 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027107
[exp]
37 / 0.001 AT2G31800 709 / 0.0 Integrin-linked protein kinase family (.1)
PFAM info
Representative CDS sequence
>Potri.007G145500.1 pacid=42766497 polypeptide=Potri.007G145500.1.p locus=Potri.007G145500 ID=Potri.007G145500.1.v4.1 annot-version=v4.1
ATGGAGGGCCTAATTCCTCTGGTTTACAAAGCTTTCATGAAGAAAAAAACTCGCAGCCAATATGAGTGCCTTTCATCCGGTGCTGCACGAGGTTACAACA
TCTCGGATTTCTACGTTCATGAAGCACCTAAAAGTGAGCTGCATTTGGAACCATCCATGGAGAAGAAAACTTATCAGAAAAAAGGTCATCAGAGATATTT
TTCTGTTCATGGAGATTTCTCAGGTGGATTTTCGTCGCTGGCAGATCGCTCAACAGCTGCTGCTTCTCCTCAAACAAAGAGACTTGTGAGGTTCAGGAGC
CAAAGAGTGTAG
AA sequence
>Potri.007G145500.1 pacid=42766497 polypeptide=Potri.007G145500.1.p locus=Potri.007G145500 ID=Potri.007G145500.1.v4.1 annot-version=v4.1
MEGLIPLVYKAFMKKKTRSQYECLSSGAARGYNISDFYVHEAPKSELHLEPSMEKKTYQKKGHQRYFSVHGDFSGGFSSLADRSTAAASPQTKRLVRFRS
QRV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59880 unknown protein Potri.007G145500
[exp]
0 1
AT2G38790 unknown protein Potri.008G025200
[exp]
1.00 0.9571
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.003G098900
[exp]
2.44 0.9400
AT3G63010 ATGID1B, GID1B GA INSENSITIVE DWARF1B, alpha/... Potri.002G213100
[exp]
4.00 0.9241
Potri.002G091600
[exp]
4.89 0.9116
AT2G38790 unknown protein Potri.008G025100
[exp]
4.89 0.9196
AT4G13620 AP2_ERF Integrase-type DNA-binding sup... Potri.017G055400
[exp]
5.47 0.8721
Potri.005G129350
[exp]
7.41 0.9020
AT5G37490 ARM repeat superfamily protein... Potri.010G103100
[exp]
8.00 0.8715
AT5G44440 FAD-binding Berberine family p... Potri.011G162828
[exp]
10.95 0.8859
AT1G61560 ATMLO6, MLO6 MILDEW RESISTANCE LOCUS O 6, S... Potri.010G220500
[exp]
11.40 0.9088

Potri.007G145500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.