Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31840 302 / 6e-101 MRL7-L Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) AT4G28590 107 / 2e-26 MRL7 Mesophyll-cell RNAi Library line 7, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G195600 [exp] 102 / 1e-24 AT4G28590 355 / 4e-122 Mesophyll-cell RNAi Library line 7, unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020901 [exp] 318 / 7e-108 AT2G31840 358 / 9e-124 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10033475 [exp] 303 / 6e-103 AT2G31840 351 / 2e-122 Mesophyll-cell RNAi Library line 7-like, Thioredoxin superfamily protein (.1) Lus10024925 [exp] 102 / 2e-24 AT4G28590 336 / 1e-114 Mesophyll-cell RNAi Library line 7, unknown protein Lus10022899 [exp] 100 / 9e-24 AT4G28590 322 / 3e-109 Mesophyll-cell RNAi Library line 7, unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G145700.1 pacid=42764905 polypeptide=Potri.007G145700.1.p locus=Potri.007G145700 ID=Potri.007G145700.1.v4.1 annot-version=v4.1 ATGGCAGTACAGCTCCACCATTTGCTTTCACCTATTAGAGATAATAAATTCAAAGACTTTCCTTCATTTCCTTTTATCACTGCTCATTCCGAATACAAAC CAACCACCTACACTGAGGTTTCTTCCACTTGTTCTTGTCTCTCATCCAAGTTTTTAAAGTACCCTTCTCAGCTACATGGTGGTGGTTTTCAAAGTAGTAT TAGTAGAGCTTCCCGAAGAGATGAAAGAGTCTTGTCTGATGATGGGAAGAAAAAACGACGAGAAGAATTTAGTGAGAGCGATGATGATGATGATGATTAC TCGTCGATAAAAGGTAAGGTGAATGACCCCTATCTTATGGATGCTGAAGAGAGACGGGAGTGGAGAATGAAAATTAGAGAAGTGATGAAAAAGCATCCTG ATGTGGATGAGGATGAGGAGCTTGATTCTGAAGAAAAGAGGATGAGAATGGAAAAGCTTTTGGCTGATTACCCCCTTATTGTGGATGAGGATGATCCTGA TTGGCCTGAAGACGCTGATGGGCGGGGCTTCGGTTTGGATCAATTCTTCAACAAGATTACTATCAAGAATAAGAAGAAGGATGATGATGATGAGAATTAT GATAGTGATAAAGAGATTGTGTGGCAAGATGATGATTACATCCGTCCAATAAAAGACATTACCACTGCAGGATGGGAGGAGGCTGTATTCAAAGACATCA GTCCTTTGATTGTCTTAGTACATAATCGCTATAAAAGACCAAAGGAAAATGAAAATATTCGAGATGCACTGGAGAAGGCTGTGCACATAATTTGGAATTG CAGACTACCTTCACCAAGATGTGTTGCGATTGATGCTGTTGTTGAGACTGATTTGGTCTCTGCTCTAAAAGTTTCTGTCTTCCCAGAAATTATTTTTACT AAAGCAGGAAAGATCTTGTACCGTGAGAAAGCCATTCGAACTGCAGATGAATTTTCAAAAATAATGGCATACTTCTATTATGGAGCTGGCAAGCCACCTT GTTTGAATGACATTGGAGATAGCCAGGAATTGATCCCATCTGTTCATGTAAGCAGCCAATCGTTCTAA
AA sequence Show only first row Show all	>Potri.007G145700.1 pacid=42764905 polypeptide=Potri.007G145700.1.p locus=Potri.007G145700 ID=Potri.007G145700.1.v4.1 annot-version=v4.1 MAVQLHHLLSPIRDNKFKDFPSFPFITAHSEYKPTTYTEVSSTCSCLSSKFLKYPSQLHGGGFQSSISRASRRDERVLSDDGKKKRREEFSESDDDDDDY SSIKGKVNDPYLMDAEERREWRMKIREVMKKHPDVDEDEELDSEEKRMRMEKLLADYPLIVDEDDPDWPEDADGRGFGLDQFFNKITIKNKKKDDDDENY DSDKEIVWQDDDYIRPIKDITTAGWEEAVFKDISPLIVLVHNRYKRPKENENIRDALEKAVHIIWNCRLPSPRCVAIDAVVETDLVSALKVSVFPEIIFT KAGKILYREKAIRTADEFSKIMAYFYYGAGKPPCLNDIGDSQELIPSVHVSSQSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Potri.007G145700 [exp]	0	1
AT3G04310			unknown protein		Potri.010G063300 [exp]	1.41	0.9654
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.005G197900 [exp]	1.41	0.9683
AT3G02060			DEAD/DEAH box helicase, putati...		Potri.014G145000 [exp]	3.46	0.9572
AT1G17850			Rhodanese/Cell cycle control p...		Potri.015G029600 [exp]	3.87	0.9570
AT4G21190		EMB1417	embryo defective 1417, Pentatr...		Potri.017G148700 [exp]	7.48	0.9566
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	8.12	0.9611
AT2G39670			Radical SAM superfamily protei...		Potri.008G056500 [exp]	10.19	0.9521
AT1G59840		CCB4	cofactor assembly of complex C...		Potri.008G191900 [exp]	11.83	0.9539
AT1G55280			Lipase/lipooxygenase, PLAT/LH2...		Potri.003G218100 [exp]	12.36	0.9367
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.002G151200 [exp]	12.48	0.9297

Compare expression of checked genes

Potri.007G145700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.