Plant FIBer expression Database

TEJ.1 (Potri.007G145800) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol TEJ.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G31870 588 / 0 PARG1, TEJ Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
AT2G31865 520 / 0 PARG2 poly(ADP-ribose) glycohydrolase 2 (.1), poly(ADP-ribose) glycohydrolase 2 (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G002000
[exp]
847 / 0 AT2G31870 615 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020902
[exp]
635 / 0 AT2G31870 655 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
Lus10033474
[exp]
624 / 0 AT2G31870 653 / 0.0 Sanskrit for 'bright', poly\(ADP-ribose\) glycohydrolase 1, Poly (ADP-ribose) glycohydrolase (PARG) (.1), Poly (ADP-ribose) glycohydrolase (PARG) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0223 MACRO PF05028 PARG_cat Poly (ADP-ribose) glycohydrolase (PARG)
Representative CDS sequence
>Potri.007G145800.1 pacid=42765471 polypeptide=Potri.007G145800.1.p locus=Potri.007G145800 ID=Potri.007G145800.1.v4.1 annot-version=v4.1
ATGGAGAATAGAGAAGATTTGAAGTCGATGCTACCGTTTCTGCCTTTATTACTTCGCTCATCAAATCTGTTTTGGCCATCACAAGTTGTTGAATTACTCA
AAACACTCTCCAAAGGACCTTTTTACAGCAAAGTTGACACTGGTGAACTGCTTTTCAATGCTATTTCCAATATCAGAGATTCTCTTGCTCTCCCTTCTCT
GCATCGTCTCTCTCCTTTTGCCCATGAAGGTTATGCTCTCTTCTTTGATGAGCTGATTTCACGGGAAGAGGCTGCAAAATGGTTTGCTGACGTTGTCCCA
ACATTGGCTAAATTGCTCTTGAGATTGCCATCTCTTTTGGAGTCTCACTATCAAAATGCTGATAACTTGCGTAATGGTGTCAAAACTGGTTTTCGCCTGT
TGGGCCCACAAGAAGCTGGCGTGGTGTTCCTCGGTCAGGAATTGATTGGTTCTCTCCTTGTATGCGCTTTCTTTTGTTTGTTTCCAGTCTCTGATAGAGA
TGATAAACGTCTTCCAACAATCAATTTTGATCATTTGTTCGAGGATATATATTCGAGTTACAGTGAAAAGCAGGAGAACAAAATAAAGTGTATTATACAT
TATTTTGAAAGGATATGTTTATCTATGCCTGAGGGCTCTGTCTCCTTTGAGAGGAAGGTTCTTCCTTTAGAACAACTTCCTTTGTGTGTTTTTTATCCCA
AGGCAGATTTTTGGATCAAATCTGTTGTTTCTCTCTGCACTTTAGAGGTCCATAGTTCAGGCTTCATCGAAGACCAATCCAGTGGAGCTCTTGAAGTTGA
TTTTTCTAACAAGTATCTTGGAGGTGGTGCTCTTCATAGGGGCTGCGTGCAGGAAGAAATCCGGTTCATGATCAATCCTGAATTAATTGCTGGAATGCTT
TTCTTACCTTGCATGGAAGACAATGAGGCTATTGAAATTGTTGGTGCTGAAAGATTCTCAAATTACACAGGGTATGCCTCTTCATTTCGTTTTTCAGGTG
ACCATGTGGACGAAAGGGATGTTGATAGTTTCAGAAGACGTAGAACCAGGATTGTTGCCATAGATGCATTGTGCAATGCAGGGATGGAACAATATAAACT
TGAATACCTCCTTCGGGAGACCAACAAGGCATTCTGTGGCTTCTTGGATCAATCTAAATGTGACCATAAAAGACTGTTTCAAGATGGTGGTTTGAAAGGT
TCTCAGTGTATTCAAGCTGGTAAAGATGATGATGTTATGGTGAAGGAATTCCCGATGGATGAAGCCCCCTCGACTTCTGTTGAAATTGCATTGAATGGAG
AAGAATCTGTAAACCAAGTGATCAGATATTCTGACAAGAAGGGTAGTTGGTGTGAAGACCCTGAAGCTAAAATTGGTATTGCTACGGGGAATTGGGGATG
CGGAGCTTTTGGTGGAGATCCTGAACTAAAGTCCATAATTCAGTGGCTTGCAGCTTCTCAGGCATTAAGACCTTCCGTTTTGTACTACACATTTGGCTTA
AAATCATTGCAGAATCTGAATCAGTTAAGTCGATGGATTCTGTTGCATGGATGGACGGTCGGAGACCTTTGGTATATGTTGGTGGAGTACTCTTCTCAGA
GATTCAACAAGGAAACTAACTTGGGATTCTTTGCATGGCTGCTCCCTTCACTATATGCCCACGAGGCTCCTTAA
AA sequence
>Potri.007G145800.1 pacid=42765471 polypeptide=Potri.007G145800.1.p locus=Potri.007G145800 ID=Potri.007G145800.1.v4.1 annot-version=v4.1
MENREDLKSMLPFLPLLLRSSNLFWPSQVVELLKTLSKGPFYSKVDTGELLFNAISNIRDSLALPSLHRLSPFAHEGYALFFDELISREEAAKWFADVVP
TLAKLLLRLPSLLESHYQNADNLRNGVKTGFRLLGPQEAGVVFLGQELIGSLLVCAFFCLFPVSDRDDKRLPTINFDHLFEDIYSSYSEKQENKIKCIIH
YFERICLSMPEGSVSFERKVLPLEQLPLCVFYPKADFWIKSVVSLCTLEVHSSGFIEDQSSGALEVDFSNKYLGGGALHRGCVQEEIRFMINPELIAGML
FLPCMEDNEAIEIVGAERFSNYTGYASSFRFSGDHVDERDVDSFRRRRTRIVAIDALCNAGMEQYKLEYLLRETNKAFCGFLDQSKCDHKRLFQDGGLKG
SQCIQAGKDDDVMVKEFPMDEAPSTSVEIALNGEESVNQVIRYSDKKGSWCEDPEAKIGIATGNWGCGAFGGDPELKSIIQWLAASQALRPSVLYYTFGL
KSLQNLNQLSRWILLHGWTVGDLWYMLVEYSSQRFNKETNLGFFAWLLPSLYAHEAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G31870 PARG1, TEJ Sanskrit for 'bright', poly\(A... Potri.007G145800
[exp]
0 1 TEJ.1
AT2G36360 Galactose oxidase/kelch repeat... Potri.008G024700
[exp]
2.00 0.8587
AT1G71820 SEC6 SEC6 (.1.2) Potri.019G088100
[exp]
2.44 0.8501
AT3G46630 Protein of unknown function (D... Potri.014G023200
[exp]
5.29 0.8025
AT1G55880 Pyridoxal-5'-phosphate-depende... Potri.001G367000
[exp]
10.58 0.7482
AT2G32320 tRNAHis guanylyltransferase (.... Potri.002G233300
[exp]
14.69 0.7258
AT5G22920 CHY-type/CTCHY-type/RING-type ... Potri.006G121801
[exp]
15.19 0.7569
AT1G12390 Cornichon family protein (.1) Potri.003G116400
[exp]
20.34 0.7818
AT4G36440 unknown protein Potri.007G019400
[exp]
26.83 0.8030
AT3G27930 unknown protein Potri.001G348700
[exp]
26.83 0.8024
AT4G38495 unknown protein Potri.016G127200
[exp]
35.07 0.7667

Potri.007G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.