Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59890 445 / 1e-157 Dihydrodipicolinate reductase, bacterial/plant (.1.2) AT2G44040 432 / 3e-152 Dihydrodipicolinate reductase, bacterial/plant (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001900 [exp] 591 / 0 AT3G59890 457 / 1e-162 Dihydrodipicolinate reductase, bacterial/plant (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041701 [exp] 437 / 2e-154 AT2G44040 460 / 1e-163 Dihydrodipicolinate reductase, bacterial/plant (.1) Lus10024047 [exp] 436 / 2e-154 AT2G44040 460 / 7e-164 Dihydrodipicolinate reductase, bacterial/plant (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01113 [poplar] [flax] DapB_N Dihydrodipicolinate reductase, N-terminus CL0139 [poplar] [flax] GADPH_aa-bio_dh PF05173 [poplar] [flax] DapB_C Dihydrodipicolinate reductase, C-terminus
Representative CDS sequence Show only first row Show all	>Potri.007G145900.2 pacid=42764828 polypeptide=Potri.007G145900.2.p locus=Potri.007G145900 ID=Potri.007G145900.2.v4.1 annot-version=v4.1 ATGTGGGTTCAAGGGGCAGAGCTTAAGCAGCCATTAAAACCGCCCTTTCTTTGCAATCCACTTAACTCTAATCGAACTCGTTTCTTCACCAACCATTATC AGAAACGGAAACCTTTTGTGGTTGTTATGTCCATGTCAACCAAAAGTACTGCTGTTCCTATCATGGTAAATGGCTGTAATGGCAAAATGGGGAGTTCTGT TATAATGGCAGCGAATTCTGCTGGACTTCAAATTCTTCCAAAATCATTTGGCCCCGAATATGAGGCTGGTAATACTGTGGAAGTTTGTGGGAATGAGATT AAAATCCATGGTCCTTCTGAAAGAGATAGTGTGCTCGCTTCCCTTTATGATGAGTATCCGAACATGATTGTGGTTGATTACACTCTGCCTACTTTGGTGA ATGATAATGCAGATCTGTATTGTAAAGTTGGGGTTCCATTTGTTATGGGAACTACTGGCGGAGACAGGGATAGATTATACAAGATTGTGGATGACTCAAA AGTTTATGCAGTAATCTCTCCACAAATGGGGAAACAGGTGGTTGCATTTCTTGCAGCTATGGACATGATGGCTGAGCAGTTTCCTGGTGCTTTCTCTGGA TACTCCCTTCATGTGAAGGAGTCCCATCAAGCAGCAAAGTTGGACACATCTGCAACTGCCAAGGCTGTCATTTCTTGCTTCAAGAAATTGGGGGTGTCTT TTGATGATCAGATAGAAATGATTCGGGATCCCAAGGAACAAAAAGAGTTGGTGGGAGTTCCAGATGAGTATTTGTCTGGTCATGCATTTCATTTCTATTA TCTGTCATCACCTGGTAAAACTGTTTCTTTGGAGTTTCAACATAATGTGTGCGGTAGATCGATATATGCTGAGGGCACCATTGACGCTGTACTTTTCCTT GCTGAGAAGATTCAATCGAAGGCTGACAAGCGGATCTACAATATAATCGATATCTTGCGGGAGGGTAACAAATGGATCCTGCTAAACCTCAATGGGACGG CTGTTGTGGCGGGGAGAGAGAGAGCAGGGTAG
AA sequence Show only first row Show all	>Potri.007G145900.2 pacid=42764828 polypeptide=Potri.007G145900.2.p locus=Potri.007G145900 ID=Potri.007G145900.2.v4.1 annot-version=v4.1 MWVQGAELKQPLKPPFLCNPLNSNRTRFFTNHYQKRKPFVVVMSMSTKSTAVPIMVNGCNGKMGSSVIMAANSAGLQILPKSFGPEYEAGNTVEVCGNEI KIHGPSERDSVLASLYDEYPNMIVVDYTLPTLVNDNADLYCKVGVPFVMGTTGGDRDRLYKIVDDSKVYAVISPQMGKQVVAFLAAMDMMAEQFPGAFSG YSLHVKESHQAAKLDTSATAKAVISCFKKLGVSFDDQIEMIRDPKEQKELVGVPDEYLSGHAFHFYYLSSPGKTVSLEFQHNVCGRSIYAEGTIDAVLFL AEKIQSKADKRIYNIIDILREGNKWILLNLNGTAVVAGRERAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G59890			Dihydrodipicolinate reductase,...		Potri.007G145900 [exp]	0	1
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	6.08	0.7459
AT2G38695			unknown protein		Potri.003G190101 [exp]	13.22	0.6777
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	28.28	0.6852
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.003G009000 [exp]	38.47	0.6567
AT3G62790			NADH-ubiquinone oxidoreductase...		Potri.002G204800 [exp]	43.78	0.6678
ATMG00810		ATMG00810.1, OR...	DNA/RNA polymerases superfamil...		Potri.013G138801 [exp]	49.11	0.6511
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	54.56	0.6506
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	60.03	0.6150
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	82.76	0.6288
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Potri.011G022400 [exp]	86.25	0.5902

Compare expression of checked genes

Potri.007G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.