Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05610 529 / 0 APS2 ADP-glucose pyrophosphorylase small subunit 2 (.1) AT5G48300 432 / 9e-148 APS1, ADG1 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) AT5G19220 330 / 9e-108 ADG2, APL1 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) AT1G27680 323 / 3e-105 APL2 ADPGLC-PPase large subunit (.1) AT4G39210 322 / 2e-104 APL3 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G21590 312 / 9e-101 APL4 Glucose-1-phosphate adenylyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001700 [exp] 802 / 0 AT1G05610 532 / 0.0 ADP-glucose pyrophosphorylase small subunit 2 (.1) Potri.014G171800 [exp] 440 / 8e-151 AT5G48300 885 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Potri.014G110000 [exp] 330 / 2e-107 AT1G27680 737 / 0.0 ADPGLC-PPase large subunit (.1) Potri.008G195100 [exp] 328 / 5e-107 AT5G19220 801 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Potri.009G118800 [exp] 323 / 9e-105 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.004G157100 [exp] 322 / 1e-104 AT4G39210 808 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Potri.002G033400 [exp] 313 / 3e-101 AT1G27680 822 / 0.0 ADPGLC-PPase large subunit (.1) Potri.005G229700 [exp] 311 / 2e-100 AT1G27680 810 / 0.0 ADPGLC-PPase large subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042456 [exp] 500 / 2e-174 AT1G05610 504 / 4e-176 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10026213 [exp] 444 / 3e-153 AT1G05610 437 / 1e-150 ADP-glucose pyrophosphorylase small subunit 2 (.1) Lus10025187 [exp] 438 / 8e-150 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10016069 [exp] 437 / 9e-150 AT5G48300 895 / 0.0 ADP-GLUCOSE PYROPHOSPHORYLASE SMALL SUBUNIT 1, ADP glucose pyrophosphorylase 1 (.1) Lus10034053 [exp] 330 / 2e-107 AT5G19220 832 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10023553 [exp] 325 / 5e-106 AT4G39210 730 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10010515 [exp] 320 / 2e-103 AT5G19220 827 / 0.0 ADP GLUCOSE PYROPHOSPHORYLASE 2, ADP glucose pyrophosphorylase large subunit 1 (.1) Lus10007209 [exp] 317 / 8e-103 AT1G27680 715 / 0.0 ADPGLC-PPase large subunit (.1) Lus10010088 [exp] 308 / 4e-99 AT1G27680 697 / 0.0 ADPGLC-PPase large subunit (.1) Lus10040437 [exp] 303 / 2e-97 AT4G39210 697 / 0.0 Glucose-1-phosphate adenylyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF00483 [poplar] [flax] NTP_transferase Nucleotidyl transferase
Representative CDS sequence Show only first row Show all	>Potri.007G146100.2 pacid=42764868 polypeptide=Potri.007G146100.2.p locus=Potri.007G146100 ID=Potri.007G146100.2.v4.1 annot-version=v4.1 ATGGTGATATTGCAGCTTTCTGGTCCCACCCCTGTAAATCCCCAAGCAAAGTTCTCCATCCTTGAATTGGCTCCTAGTAGTCGAAAACATTTAACAACTT TATCTTCTTTCTCTTTGCCAAGTTTGTTCATATCCAATTCTCAGCAACCTCAACACCCCATATCCTCATTCTCTCCAGTAAATCAGAGTGTTGCAGCTAT TGTATTTGGAGACGGATCAGAGTCAAGACTCTATCCATTGACAAAGAGAAGATCAGAAGGAGCCATTCCGTTAGGAGCAAAGTACAGAATCGTTGATGCA GTTATCAGCAACTGTATTAACAGTAACATAAACAAGATATATGCTCTAACACAATATAACTCTACTTATCTCAATTCTCACCTCTCAAGAGCATATTCTG GCTTAGGCCTTGGAAAAGATGGGTTTGTTGAAGTTATTGCAGCATATCAGAGTCTTGAAGAGCAAGGCTGGTTTCAGGGAACTGCTGATGCTATAAGAAG GTGCTTGTGGGTACTGGAAGAGCACCAAGTGTCCGAGTTTCTTGTCCTTCCTGGCCACCATCTCTACAGAATGGACTACCAGAAACTAGTAGAAACTCAT CGAAGAAGCCAGGCTGATATAACAATTGCAGCTTTGAATTCAACAAGAGATCAAGACCCAGGTTTTGGCACATTAAAAGTGAATTCACTAAATGAAGTTG CAGAGTTCCACGTGAAGTCAGAGAGGGAGCCAATGATTGTCCCTTCGGCTCAAAGTTCCCAAGCATTCAATGATAATGCTTATAGGAAGTTATCAAGCAT GGGGATCTATCTTGTTAATAGAAATACTATGACAAAGCTTCTAAATGAATACTTCCCCCAGGCAAATGAATTCGGAACTGAAGTGATACCTGGCGCAATT TCGATTGGAATGAAGGTTCAAGCTTATGCATTTGATGGATACTGGGAGGACATGAGTAGCATTGCAGCATTTTATCAAGCAAACATGGAATGCATAAAGG GATTAAACATGGGATACAACAGCTTCTACGATAAAGATGCTCCTCTATACACCATGCCTCGCTATCTGCCTCCATCTACTATAATTGATGCTGTCATAAC AGACAGTGTGGTTGGAGATGGTTGCATCCTTAATAGGTGCAAGATAAAAGGAACAGTTCTTGGTATGAGGACAACCATTGGAGAAAAGGCCATCATTGAA GATTCAGTCATCATGGGCTCTGATATCTATCAAAAAGACTATATCCAAAGGAGTAGCAAGGAGGGCATGGCAATTCCGATAGGAATTGGTGATGAGACTC ACATAAAGAAAGCTATTATAGATAAGAATGCAAGGATTGGCAGAAATGTAATGATTATTAACAAAGACAATGTGCAAGAAAGCAACAGGGAGGCCAATGG CTACATAATCAGTGGAGGAATAGTGGTGGTTCTAGAGAGTGCAGTGATCCCAGATGGCAGCATTTTATGA
AA sequence Show only first row Show all	>Potri.007G146100.2 pacid=42764868 polypeptide=Potri.007G146100.2.p locus=Potri.007G146100 ID=Potri.007G146100.2.v4.1 annot-version=v4.1 MVILQLSGPTPVNPQAKFSILELAPSSRKHLTTLSSFSLPSLFISNSQQPQHPISSFSPVNQSVAAIVFGDGSESRLYPLTKRRSEGAIPLGAKYRIVDA VISNCINSNINKIYALTQYNSTYLNSHLSRAYSGLGLGKDGFVEVIAAYQSLEEQGWFQGTADAIRRCLWVLEEHQVSEFLVLPGHHLYRMDYQKLVETH RRSQADITIAALNSTRDQDPGFGTLKVNSLNEVAEFHVKSEREPMIVPSAQSSQAFNDNAYRKLSSMGIYLVNRNTMTKLLNEYFPQANEFGTEVIPGAI SIGMKVQAYAFDGYWEDMSSIAAFYQANMECIKGLNMGYNSFYDKDAPLYTMPRYLPPSTIIDAVITDSVVGDGCILNRCKIKGTVLGMRTTIGEKAIIE DSVIMGSDIYQKDYIQRSSKEGMAIPIGIGDETHIKKAIIDKNARIGRNVMIINKDNVQESNREANGYIISGGIVVVLESAVIPDGSIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.007G146100 [exp]	0	1
					Potri.012G109500 [exp]	2.44	0.8932
					Potri.001G444350 [exp]	6.08	0.9089
					Potri.001G381100 [exp]	7.07	0.9068
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.018G043900 [exp]	9.84	0.8104
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	10.24	0.8938
					Potri.001G388801 [exp]	10.67	0.8368
AT5G25570			unknown protein		Potri.006G245100 [exp]	12.80	0.8452
AT3G50870	GATA	GATA18, HAN, MN...	MONOPOLE, HANABA TANARU, GATA ...		Potri.007G024500 [exp]	13.03	0.8850	Pt-MNP.1
AT1G78960		ATLUP2	lupeol synthase 2 (.1)		Potri.009G064950 [exp]	15.65	0.8515
					Potri.014G093600 [exp]	16.00	0.8966

Compare expression of checked genes

Potri.007G146100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.