Plant FIBer expression Database

Potri.007G146500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G59910 847 / 0 Ankyrin repeat family protein (.1)
AT2G44090 822 / 0 Ankyrin repeat family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G001300
[exp]
1149 / 0 AT3G59910 860 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010581
[exp]
980 / 0 AT3G59910 885 / 0.0 Ankyrin repeat family protein (.1)
Lus10005306
[exp]
977 / 0 AT3G59910 877 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence
>Potri.007G146500.3 pacid=42764923 polypeptide=Potri.007G146500.3.p locus=Potri.007G146500 ID=Potri.007G146500.3.v4.1 annot-version=v4.1
ATGATCGCATTGTTAAGGATATTTGAGTGTTTGCCTGATTGGGATTTTTTTTTAATTTGTTTTTTAGTTTGCTGGCGTGGTGGTTGTATAGTGGAAAGTA
TGGAAAAGGAGACAGCGTTGGTGGAGGGGACTGATATGCATCTGGAGGATGTGTTTAACCCCGAAGAGTCATTTACTGTGGAAATGGAAACCGAAGAGAA
TGAAATTGGAAGTCCAAAGAGTGAAATTCAATGTTTCTCATCGGAAATGGGCGAGGGAAGTAATGTTGTATTTTCAAGAGAAGCACCCCATATCAGTACA
GAGTCAAGAGTATCAGGTGTTTGTAGTTGTAGTGCGACAAAAATCAAGCCACATGTGGTTGCAATGGAGTCTGAGATTGGCGACAAGGAGAATTTTGGAC
AGGAGAAGAAACTCAGTAGGCAAGATAGGATTGAGTTGGGCCGGATGTTTCAGAGTGCAGTGAGTTGCCATGACTGGGAGCCTGCTGAGAGTTTGATATT
GTTGGCTGATCCACAGACCCTTAATGATGCCTTGTGTATCACACTGGACTCTATCTGGTTTTTGAGCACACAGCAAGAGCTTGACGGGATAACCAGTTTG
ATTAAGAAGATTATTGCCAATGGTGCTTATGACTTTACTAGAGCTGCTCTTAGAACTTCTTTTCTTGCTTCATGTGTTTCGGCCTGCCAGAGCCAAACGA
TGCATCTTGAAGACACAGTAAATGTGATGGCCCAAAGATTGAAGGAGCGACTTAAGGAGTGCAATGGAGATGAGGTCTTGAAGGCAGAAGCCAGTGCCAA
GGTTCAAAAGTTTACTGAGTGGGCTCTGAAATGTATTGGCTTCCATTCTCGCTGCCAGGCGAATAGAGACCGGGTGATTCAAAGCTCAATTGCTGAGATT
CAACTTCAATTGTCTGCATTCAAGACGTTTCTTGATCTCGCTGGCAATCAACTCACAGGGAAGGATTTCACAGAGGCCTTTGATGCAGCCTGTTTTCCGC
TTACTTTATTCTCCACTTCATTCGATCCTGGCTGGGCATCTGGGATATCAGCAGCTGCAATCCAAGGGTTGCTTGGTATGTTGGTTGAAGGGGGTGCAGA
CAATGTTAACCAGTGTTTCCTTGAAGCCTCTCGCTTTGGAAGTACAGAACTTGTGCGCATTCTGTTACAGATTGCCCATTGGAACAGCTTGGATGTCGAT
GTTGATCTGGCCCTAGGTTTTGCTTCTCACTACTGCAAAATTGGTACAATGGAATGTCTAGTGGAAGAGGGCAATGCCATAGCTTTCTTGGGCCCTTTAA
TGAGAGCAGCTGAAAGGGGTTGCATGCAGGTTGTTCAGTGGTTTGTGAAAAGGGGTTGCCGTGACATGGAACTCTGCCTTGCTCTCACTGCTGCGACTTC
TAGTAGCCAAGTTGATGTTGCTGGATATCTCCTCCCTCACGTTCCTCATCATGTTCTTGCTGCCCTCAGCATAGAAATTCTCAAGGCTGCTGGGGAGCGA
AGTGGCGGGTCACTTGATGGCGTGGCATTTCTGTTATGTTCTGATTTCTTGGGTGATCCTACTGCTACTTATGCTGTTGCTGACAGCATTGCTCGGTCTG
ATGATGAGTCTGTCGCCCCTGAGCTCAGGGCTTTTCTTCGAGAGCACTGGTCAGAGGCAGCATACTTGGATGGATTAAAGCAAGGACAAGAACATTACAT
GAATCTTGTGAGGATTTTGAATTGGGGTGGATCGCCTATATCCTTAAGGGATCTGCCAGGCCCTTTAAGAGTGGCAGTTGCTTATCTGCCATTGTTCAGG
GAGTGTGTAGCAACTGGTGGTTGTTTACTTTCACAAAAGCAAAGGGGTCAGCTTGTTGAAGCTGTTAGAAAACTTGGGGGTGGGTCCTTAGAAGATGTGA
GCCAAGGAAAAGAACTCTTGGCTGTTTTGGAACATTACCTTCCTCCTTTTTTGGTTCATACCCGCAGCGTGGCCTAG
AA sequence
>Potri.007G146500.3 pacid=42764923 polypeptide=Potri.007G146500.3.p locus=Potri.007G146500 ID=Potri.007G146500.3.v4.1 annot-version=v4.1
MIALLRIFECLPDWDFFLICFLVCWRGGCIVESMEKETALVEGTDMHLEDVFNPEESFTVEMETEENEIGSPKSEIQCFSSEMGEGSNVVFSREAPHIST
ESRVSGVCSCSATKIKPHVVAMESEIGDKENFGQEKKLSRQDRIELGRMFQSAVSCHDWEPAESLILLADPQTLNDALCITLDSIWFLSTQQELDGITSL
IKKIIANGAYDFTRAALRTSFLASCVSACQSQTMHLEDTVNVMAQRLKERLKECNGDEVLKAEASAKVQKFTEWALKCIGFHSRCQANRDRVIQSSIAEI
QLQLSAFKTFLDLAGNQLTGKDFTEAFDAACFPLTLFSTSFDPGWASGISAAAIQGLLGMLVEGGADNVNQCFLEASRFGSTELVRILLQIAHWNSLDVD
VDLALGFASHYCKIGTMECLVEEGNAIAFLGPLMRAAERGCMQVVQWFVKRGCRDMELCLALTAATSSSQVDVAGYLLPHVPHHVLAALSIEILKAAGER
SGGSLDGVAFLLCSDFLGDPTATYAVADSIARSDDESVAPELRAFLREHWSEAAYLDGLKQGQEHYMNLVRILNWGGSPISLRDLPGPLRVAVAYLPLFR
ECVATGGCLLSQKQRGQLVEAVRKLGGGSLEDVSQGKELLAVLEHYLPPFLVHTRSVA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G59910 Ankyrin repeat family protein ... Potri.007G146500
[exp]
0 1
AT4G26620 Sucrase/ferredoxin-like family... Potri.001G369300
[exp]
1.41 0.8403
AT5G61450 P-loop containing nucleoside t... Potri.003G108000
[exp]
3.31 0.8270
AT3G22430 unknown protein Potri.010G087400
[exp]
3.87 0.8633
AT1G17640 RNA-binding (RRM/RBD/RNP motif... Potri.003G040900
[exp]
6.00 0.8392
AT3G43230 RING/FYVE/PHD-type zinc finger... Potri.018G064200
[exp]
7.48 0.8362
AT4G24040 TREHALASE1, ATT... trehalase 1 (.1) Potri.001G087100
[exp]
9.48 0.8282
AT1G56560 A/N-InvA alkaline/neutral invertase A, ... Potri.005G010800
[exp]
10.39 0.8268
AT1G68740 PHO1;H1 EXS (ERD1/XPR1/SYG1) family pr... Potri.010G132300
[exp]
12.32 0.7658
AT1G60670 Protein of unknown function (D... Potri.010G097000
[exp]
14.69 0.8065
AT5G11380 DXPS3 1-deoxy-D-xylulose 5-phosphate... Potri.006G249700
[exp]
14.83 0.8119

Potri.007G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.